Construct: ORF TRCN0000472960
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007895.1_s317c1
- Derived from:
- ccsbBroadEn_02038
- DNA Barcode:
- GGAGTGAGCTGTTCACGGAAGAGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- VNN1 (8876)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472960
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8876 | VNN1 | vanin 1 | NM_004666.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1608
- ORF length:
- 1539
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gactactcag ttgccagctt acgtggcaat tttgcttttc tatgtctcaa 121 gagccagctg ccaggacact ttcactgcag ctgtttatga gcatgcagcg atattgccca 181 atgccaccct aacaccagtg tctcgtgagg aggctttggc attaatgaat cggaatctgg 241 acattttgga aggagcgatc acatcagcag cagatcaggg tgcgcatatt attgtgactc 301 cagaagatgc tatttatggc tggaacttca acagggactc tctctaccca tatttggagg 361 acatcccaga ccctgaagta aactggatcc cctgtaataa tcgtaacaga tttggccaga 421 ccccagtaca agaaagactc agctgcctgg ccaagaacaa ctctatctat gttgtggcaa 481 atattgggga caagaagcca tgcgatacca gtgatcctca gtgtccccct gatggccgtt 541 accaatacaa cactgatgtg gtatttgatt ctcaaggaaa actggtggca cgctaccata 601 agcaaaacct tttcatgggt gaaaatcaat tcaatgtacc caaggagcct gagattgtga 661 ctttcaatac cacctttgga agttttggca ttttcacatg ctttgatata ctcttccatg 721 atcctgctgt taccttggtg aaagatttcc acgtggacac catagtattc ccaacagctt 781 ggatgaatgt tttgccacat ttgtcagctg ttgaattcca ctcagcttgg gctatgggca 841 tgagggtcaa tttccttgca tccaacatac attacccctc aaagaaaatg acaggaagtg 901 gcatctatgc acccaattct tcaagagcat ttcattatga tatgaagaca gaagagggaa 961 aactcctcct ctcgcaactg gattcccacc catcccattc tgcagtggtg aactggactt 1021 cctatgccag cagtatagaa gcgctctcat caggaaacaa ggaatttaaa ggcactgtct 1081 ttttcgatga attcactttt gtgaagctca caggagttgc aggaaattat acagtttgtc 1141 agaaagatct ctgctgtcat tTAAGCTACA AAATGTCTGA GAACATACCA AATGAAGTGT 1201 ACGCTCTAGG GGCATTTGAC GGACTGCACA CTGTGGAAGG GCGCTATTAT CTACAGATTT 1261 GTACCCTGTT GAAATGTAAA ACGACTAATT TAAACACTTG CGGTGACTCA GCTGAAACAG 1321 CTTCTACCAG GTTTGAAATG TTCTCCCTCA GTGGCACTTT CGGAACCCAG TATGTCTTTC 1381 CTGAGGTGTT GCTGAGTGAA AATCAGCTTG CACCTGGAGA ATTTCAGGTG TCAACTGACG 1441 GACGCTTGTT TAGTCTGAAG CCAACATCCG GACCTGTCTT AACAGTAACT CTGTTTGGGA 1501 GGTTGTATGA GAAGGACTGG GCATCAAATG CTTCATCAGG CCTCACAGCA CAAGCAAGAA 1561 TAATAATGCT AATAGTTATA GCACCTATTG TATGCTCATT AAGTTGGTTG CCAACTTTCT 1621 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 1681 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 1741 GTGGAAAGGA CGAGGAGTGA GCTGTTCACG GAAGAGAACG CGTTAAGTCg acaatcaacc 1801 tctggattac aaaatttgtg aaagatt