Construct: ORF TRCN0000472991

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002650.1_s317c1
Derived from:
ccsbBroadEn_12757
DNA Barcode:
TAAAAGGATCACTCTCTGCAGGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMTC1 (83857)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472991
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020007.2 36.7% 36.5% 1_1164del;1223_1231delGGTACAAGC
2 human 83857 TMTC1 transmembrane O-mannosyltra... XM_024449218.1 32.1% 32% 1_1425del;1484_1492delGGTACAAGC
3 human 83857 TMTC1 transmembrane O-mannosyltra... NM_175861.3 29.3% 29.1% 1_1632del;1691_1699delGGTACAAGC
4 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020005.1 27.9% 27.7% 1_1749del;1808_1816delGGTACAAGC
5 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020004.1 25.9% 25.8% 1_1935del;1994_2002delGGTACAAGC
6 human 83857 TMTC1 transmembrane O-mannosyltra... NM_001193451.2 25.7% 25.6% 1_1956del;2015_2023delGGTACAAGC
7 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020003.1 25.5% 25.4% 1_1974del;2033_2041delGGTACAAGC
8 human 83857 TMTC1 transmembrane O-mannosyltra... NM_001367875.2 24% 23.9% 1_2142del;2201_2209delGGTACAAGC
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
747
ORF length:
681
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gaacttggga agactctaca ggtcactggg agagaacagc atggctgaag
121aatgcgccct gcaggtggca cacaaagctg agatattgtc acctttggga gcactgtatt
181acaacactgg ccgatacgaa gaggctttgc agatttacca ggaagctgca gcacttcagc
241cttctcagag ggagctccgc ttggcactgg ctcaggtttt ggccgtgatg ggTCAGACAA
301AAGAAGCTGA AAAGATGACC AATCACATTG TGTCAGAGGA GACCGGATGC CTTGAATGCT
361ATCGCCTCTT GTCAGCCATC TATAGCAAGC AGGAGAACCA CGACAAGGCA CTTGATGCTA
421TAGACAAGGC TCTCCAGCTG AAACCAAAGG ACCCAAAAGT CATTTCTGAA CTTTTTTTCA
481CAAAAGGAAA CCAATTAAGA GAGCAGAACC TTCTCGACAA AGCTTTTGAG AGCTATAGAG
541TGGCTGTGCA ACTAAACCCA GACCAAGCAC AGGCCTGGAT GAACATGGGT GGCATCCAAC
601ACATCAAGGG AAAATATGTG TCTGCAAGAG CTTATTATGA GAGAGCCTTA CAGCTGGTTC
661CAGACAGCAA ACTGCTGAAG GAAAATCTTG CCAAATTGGA TCGCCTAGAA AAACGATTAC
721AAGAAGTTCG AGAAAAGGAT CAAACATACC CAACTTTCTT GTACAAAGTG GTTGATATCG
781GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
841AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATAAAAGGA
901TCACTCTCTG CAGGACACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
961aagatt

Download FASTA (ORF) (Full)