Construct: ORF TRCN0000473016
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002646.1_s317c1
- Derived from:
- ccsbBroadEn_13538
- DNA Barcode:
- GCTCAATAATTTACAGGCTTGGAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL23AP82 (284942)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473016
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 118433 | RPL23AP7 | ribosomal protein L23a pseu... | NR_024531.1 | 23.8% | (many diffs) | |
| 2 | human | 118433 | RPL23AP7 | ribosomal protein L23a pseu... | NR_024530.1 | 23.7% | (many diffs) | |
| 3 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_430735.3 | 14.4% | (many diffs) | |
| 4 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_942193.2 | 14.4% | (many diffs) | |
| 5 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_254459.3 | 14.4% | (many diffs) | |
| 6 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_942194.2 | 14.4% | (many diffs) | |
| 7 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_254460.3 | 14.4% | (many diffs) | |
| 8 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_942195.2 | 14.4% | (many diffs) | |
| 9 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745752.2 | 11.8% | (many diffs) | |
| 10 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745753.2 | 11.3% | (many diffs) | |
| 11 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745755.2 | 11% | (many diffs) | |
| 12 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745754.2 | 10.9% | (many diffs) | |
| 13 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745751.2 | 10.5% | (many diffs) | |
| 14 | human | 284593 | FAM41C | family with sequence simila... | NR_027055.1 | 9.5% | (many diffs) | |
| 15 | human | 107987272 | LOC107987272 | uncharacterized LOC107987272 | XR_001754025.1 | 8.7% | (many diffs) | |
| 16 | human | 107985295 | LOC107985295 | uncharacterized LOC107985295 | XR_001753827.1 | 7.8% | (many diffs) | |
| 17 | human | 107985295 | LOC107985295 | uncharacterized LOC107985295 | XR_001753826.1 | 7.8% | (many diffs) | |
| 18 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745756.2 | 7.7% | (many diffs) | |
| 19 | human | 101930129 | LOC101930129 | uncharacterized LOC101930129 | XR_001748086.2 | 7.1% | (many diffs) | |
| 20 | human | 101930129 | LOC101930129 | uncharacterized LOC101930129 | XR_001748087.2 | 7.1% | (many diffs) | |
| 21 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002956529.1 | 7% | (many diffs) | |
| 22 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002956530.1 | 7% | (many diffs) | |
| 23 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002956531.1 | 7% | (many diffs) | |
| 24 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_941341.3 | 6.6% | (many diffs) | |
| 25 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002958929.1 | 6.3% | (many diffs) | |
| 26 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002958930.1 | 6.3% | (many diffs) | |
| 27 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002958931.1 | 6.3% | (many diffs) | |
| 28 | human | 105371423 | LINC02193 | long intergenic non-protein... | XR_001752318.2 | 4.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 320
- ORF end:
- 509
- ORF length:
- 189
- Sequence:
-
1 TCAGCCGTCG CTTCATGTGA CTCCACGGAG TACCGGGCGC CGTCCAGGCA CCTCGATTAG 61 TTCTCGAGCT TTTGGAGTAC GTCGTCTTTA GGTTGGGGGG AGGGGTTTTA TGCGATGGAG 121 TTTCCCCACA CTGAGTGGGT GGAGACTGAA GTTAGGCCAG CTTGGCACTT GATGTAATTC 181 TCCTTGGAAT TTGCCCTTTT TGAGTTTGGA TCTTGGTTCA TTCTCAAGCC TCAGACAGTG 241 GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT GATCAACAAG 301 TTTGTACAAA AAAGTTGGCA TGCTGGTGGC CTGGACAGTG AAGGGAGAGA AGTGGATTTG 361 GGAGACATTT AGGAGGAACA GTAAGAGGAC CTTGTGCATG AATAATTTGT TTCCACACTA 421 CAGAAAGAAT CCCAGACTTC TTAGAGAACC CAGTGACTTT TTGCACCTTA AATCTGTGAA 481 ATCCTCATGT TTTCTTCTGC CGTATCCATA CCCAACTTTC TTGTACAAAG TGGTTGATAT 541 CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC 601 GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGCTCAA 661 TAATTTACAG GCTTGGAAAC GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt 721 gaaagatt