Construct: ORF TRCN0000473083

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009836.1_s317c1
Derived from:
ccsbBroadEn_13371
DNA Barcode:
CTATGCTTCTACGCGATTGGTTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EEF1DP3 (196549)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473083
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1936 EEF1D eukaryotic translation elon... NM_001130055.3 42.9% 30.3% (many diffs)
2 human 1936 EEF1D eukaryotic translation elon... NM_001130057.3 42.9% 30.3% (many diffs)
3 human 1936 EEF1D eukaryotic translation elon... NM_001289950.3 42.9% 30.3% (many diffs)
4 human 1936 EEF1D eukaryotic translation elon... NM_001960.6 42.9% 30.3% (many diffs)
5 human 1936 EEF1D eukaryotic translation elon... XM_006716525.1 42.9% 30.3% (many diffs)
6 human 1936 EEF1D eukaryotic translation elon... NM_001195203.3 42.3% 29.6% (many diffs)
7 human 1936 EEF1D eukaryotic translation elon... NM_001130056.4 36% 23.8% (many diffs)
8 human 1936 EEF1D eukaryotic translation elon... NM_001317743.3 36% 23.8% (many diffs)
9 human 1936 EEF1D eukaryotic translation elon... NM_001330646.2 36% 23.8% (many diffs)
10 human 1936 EEF1D eukaryotic translation elon... XM_006716519.4 18.6% 13.3% (many diffs)
11 human 1936 EEF1D eukaryotic translation elon... XM_017013171.1 18.6% 13.3% (many diffs)
12 human 1936 EEF1D eukaryotic translation elon... XM_024447088.1 18.6% 13.3% (many diffs)
13 human 1936 EEF1D eukaryotic translation elon... NM_001130053.4 18.6% 13.3% (many diffs)
14 human 1936 EEF1D eukaryotic translation elon... NM_032378.6 18.6% 13.3% (many diffs)
15 human 1936 EEF1D eukaryotic translation elon... XM_005250820.4 18.6% 13.3% (many diffs)
16 human 1936 EEF1D eukaryotic translation elon... XM_005250823.1 18.6% 13.3% (many diffs)
17 human 1936 EEF1D eukaryotic translation elon... XM_006716522.1 18.6% 13.3% (many diffs)
18 human 1936 EEF1D eukaryotic translation elon... XM_006716523.2 18.6% 13.3% (many diffs)
19 human 1936 EEF1D eukaryotic translation elon... XM_006716524.1 18.6% 13.3% (many diffs)
20 human 1936 EEF1D eukaryotic translation elon... XM_011516905.2 18.6% 13.3% (many diffs)
21 human 1936 EEF1D eukaryotic translation elon... XM_011516906.3 18.6% 13.3% (many diffs)
22 human 1936 EEF1D eukaryotic translation elon... XM_017013170.2 18.6% 13.3% (many diffs)
23 human 1936 EEF1D eukaryotic translation elon... XM_006716520.4 15.6% 10.4% (many diffs)
24 human 1936 EEF1D eukaryotic translation elon... XM_017013172.1 15.6% 10.4% (many diffs)
25 human 1936 EEF1D eukaryotic translation elon... XM_024447089.1 15.6% 10.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
465
ORF length:
399
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tacaaacttt ctagtaggtg agaagatctg gttcCACAAG TTCAAATATG
121GCGATGCAGA AAGGAGATTC TACGAACAGA TGAACGGGCC TGTGGCCGGC GCCTCCCTCC
181AGGAGGCCAG CATGATCCTC CATGATATTG CCAGAGCCAG AGAGAACATC CCGAAATCCC
241TGGCCGGAAG CTTAGGCCCA GGGGCGTCTA GCGGCCCCAG CGGAGACCAC AGCGAGCTCG
301TCGTCCGGAT CGCCAGTCTG GAAGTGGACA ACCAGAGAGA CCTGGCTGAA CGTGCTGGAG
361AAGAGCTTGC CCGGCCACTG GGCCACAGCC CCGCAGACCC AGCACATGTC TCCCATGCGC
421CAAGTGGAGC CCCCGGCCAA GAAGCTAGCC ACACCAGCAG AGGATGCCCA ACTTTCTTGT
481ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
541AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
601GAAAGGACGA CTATGCTTCT ACGCGATTGG TTGCACGCGT TAAGTCgaca atcaacctct
661ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)