Construct: ORF TRCN0000473293
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017251.1_s317c1
- Derived from:
- ccsbBroadEn_15260
- DNA Barcode:
- AAATTACCAAATTATGGCATAGAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF569 (148266)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473293
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 148266 | ZNF569 | zinc finger protein 569 | NM_001330482.2 | 57.4% | 57.3% | 907_916delGGGGAAAAAC;918C>A;920_1581del |
| 2 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026379.1 | 57.4% | 57.3% | 907_916delGGGGAAAAAC;918C>A;920_1581del |
| 3 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026380.1 | 57.4% | 57.3% | 907_916delGGGGAAAAAC;918C>A;920_1581del |
| 4 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026382.2 | 57.4% | 57.3% | 907_916delGGGGAAAAAC;918C>A;920_1581del |
| 5 | human | 148266 | ZNF569 | zinc finger protein 569 | NM_152484.3 | 44.1% | 44% | (many diffs) |
| 6 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_011526539.3 | 44.1% | 44% | (many diffs) |
| 7 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026376.1 | 44.1% | 44% | (many diffs) |
| 8 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_017026377.2 | 44.1% | 44% | (many diffs) |
| 9 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_006723046.2 | 42.6% | 42.5% | (many diffs) |
| 10 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_006723047.4 | 42.6% | 42.5% | (many diffs) |
| 11 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_006723048.4 | 42.6% | 42.5% | (many diffs) |
| 12 | human | 148266 | ZNF569 | zinc finger protein 569 | XM_011526538.3 | 42.6% | 42.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 978
- ORF length:
- 909
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gagaaaggag cattgtgaat ataatgaacc tgtgaaatca tatggtaata 121 gctcatccca ttttgtcatt acccccttta agtgtaatca ttgtggaaaa ggcttcaatc 181 agactttgga cctcatcaga catctgagaa ttcatactgg agagaagccc tatgaatgta 241 gtaactgtag aaaagccttc agtcacaagg aaaaacttat taaacattat aaaattcaca 301 gtagggagca gtcttacaaa tgtaatgaat gtggtaaagc tttcattaaa atgtcaaatc 361 tcattagaca tcaaagaatt catactggag agaagcccta tgcatgtaag gaatgtgaga 421 agtccttcag ccagaaatca aatcttattg atcatgaaaa aattcatact ggagagaaac 481 cttatgaatg taatgagtgt ggaaaagcat tcagccagaa gcaaagcctc attgcacatc 541 agaaagttca tactggggag aaaccttatg catgtaatga atgtggtaaa gccttccctc 601 gaattgcatc ccttgctctt catatgagaa gtcatacagg agaaaaacct tataaatgtg 661 ataaatgtgg taaagccttc tctcagtttt ccatgcttat tatacatgtt agaattcata 721 caggtgaaaa accctatgaa tgtaatgagt gtggaaaagc cttctctcaa agctcagccc 781 ttactgtaca tatgagaagt cacactggtg agaaacccTA TGAATGTAAG GAATGCAGAA 841 AAGCCTTCAG CCACAAGAAA AACTTCATTA CACACCAGAA AATTCATACT AGAGAGAAAC 901 CTTATGAGTG TAATGAATGT GGGAAAGCTT TTATACAGAT GTCAAATCTT GTTAGACACC 961 AGAGAATTCA TACTCATTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1021 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1081 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAAAATTAC CAAATTATGG 1141 CATAGATACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt