Construct: ORF TRCN0000473562

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012188.1_s317c1
Derived from:
ccsbBroadEn_09254
DNA Barcode:
GTACTCACTGGGCCCAACGCACGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PAQR8 (85315)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473562
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85315 PAQR8 progestin and adipoQ recept... NM_133367.5 99.8% 99.4% 53A>G;598C>T
2 mouse 74229 Paqr8 progestin and adipoQ recept... NM_028829.3 86.4% 93.5% (many diffs)
3 mouse 74229 Paqr8 progestin and adipoQ recept... XM_006495577.2 86.4% 93.5% (many diffs)
4 mouse 74229 Paqr8 progestin and adipoQ recept... XM_006495578.3 86.4% 93.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1128
ORF length:
1062
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac gaccgccatc ttggagcgcc tgagcaccct gtcggtcagc gggcagcggc
121tgcgccgcct gcccaagatc ctggaggatg ggcttcccaa gatgccttgc actgtcccag
181aaacggatgt gccccagctc ttccgggagc cttacatccg caccggctac cgccccacgg
241ggcacgagtg gcgctactac ttcttcagcc tctttcagaa acacaacgag gtggtcaacg
301tctggaccca tttactggca gccctggccg tcctcttgcg attctgggcc tttgccgagg
361ctgaggcctt gccatgggcg tctacccact ccctgcctct gctcctcttc atcctgtcgt
421caatcactta cctcacctgc agccttctgg cccacctgct gcagtccaag tcagagctct
481cccactacac cttctacttt gtggactatg ttggcgtgag cgtttaccaa tatggcagtg
541ctttggctca tttcttctac agctctgacc aggcctggta tgaccggttc tggcttttct
601tcttgccagc agctgccttc tgtggctggt tatcttgtgc tggctgttgc tatgccaaat
661attgttaccg gaggccttat ccagtcatga ggaagatctg tcaagtggtg ccagcaggtc
721tggcttttat cctagacatc agcccTGTGG CACACCGTGT GGCGCTCTGT CACCTGGCTG
781GCTGCCAGGA GCAAGCAGCC TGGTACCACA CCCTCCAGAT CCTCTTCTTC CTGGTTAGCG
841CTTATTTCTT CTCCTGCCCC GTGCCTGAGA AGTACTTCCC GGGTTCCTGT GACATCGTGG
901GCCATGGGCA TCAGATCTTC CATGCATTTC TGTCCATCTG TACGCTCTCC CAGCTGGAGG
961CCATCCTCCT GGACTACCAG GGGCGGCAGG AGATCTTCCT GCAGCGCCAT GGACCCCTAT
1021CTGTCCACAT GGCCTGCCTC TCCTTCTTCT TCCTGGCTGC CTGCAGTGCT GCCACCGCAG
1081CCCTTCTGAG GCACAAAGTC AAGGCCAGAC TGACCAAGAA AGATTCCTGC CCAACTTTCT
1141TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1201CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1261GTGGAAAGGA CGAGTACTCA CTGGGCCCAA CGCACGGACG CGTTAAGTCg acaatcaacc
1321tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)