Construct: ORF TRCN0000473680

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004838.1_s317c1
Derived from:
ccsbBroadEn_00435
DNA Barcode:
ATTTTGTTGGGGTTAGCCCAGGAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DEFA3 (1668)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473680
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1668 DEFA3 defensin alpha 3 NM_005217.4 100% 100%
2 human 728358 DEFA1B defensin alpha 1B NM_001042500.1 99.6% 98.9% 194C>A
3 human 1667 DEFA1 defensin alpha 1 NM_004084.3 99.6% 98.9% 194C>A
4 human 1668 DEFA3 defensin alpha 3 XM_011534741.2 93% 93% 1_21del
5 human 728358 DEFA1B defensin alpha 1B NM_001302265.1 92.7% 92% 1_21del;215C>A
6 human 1667 DEFA1 defensin alpha 1 XM_011534740.3 92.7% 92% 1_21del;215C>A
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
348
ORF length:
282
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag gaccctcgcc atCCTTGCTG CCATTCTCCT GGTGGCCCTG CAGGCCCAGG
121CTGAGCCACT CCAGGCAAGA GCTGATGAGG TTGCTGCAGC CCCGGAGCAG ATTGCAGCGG
181ACATCCCAGA AGTGGTTGTT TCCCTTGCAT GGGACGAAAG CTTGGCTCCA AAGCATCCAG
241GCTCAAGGAA AAACATGGAC TGCTATTGCA GAATACCAGC GTGCATTGCA GGAGAACGTC
301GCTATGGAAC CTGCATCTAC CAGGGAAGAC TCTGGGCATT CTGCTGCTGC CCAACTTTCT
361TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
421CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
481GTGGAAAGGA CGAATTTTGT TGGGGTTAGC CCAGGATACG CGTTAAGTCg acaatcaacc
541tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)