Construct: ORF TRCN0000473920
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002691.1_s317c1
- Derived from:
- ccsbBroadEn_11667
- DNA Barcode:
- AGAGAACGTGGGGCCACATATGAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLUAP1 (23059)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473920
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23059 | CLUAP1 | clusterin associated protein 1 | NM_015041.3 | 97% | 96.8% | 1_36del;1201C>T |
| 2 | human | 23059 | CLUAP1 | clusterin associated protein 1 | NM_001330454.2 | 92.7% | 92.5% | 1_36del;1093_1149del;1258C>T |
| 3 | human | 23059 | CLUAP1 | clusterin associated protein 1 | XM_006720867.3 | 84.9% | 84.7% | 0_1ins180;985C>T |
| 4 | human | 23059 | CLUAP1 | clusterin associated protein 1 | XM_017023073.1 | 81.1% | 80.9% | 0_1ins180;877_933del;1042C>T |
| 5 | human | 23059 | CLUAP1 | clusterin associated protein 1 | NM_024793.2 | 61.5% | 61.3% | 0_1ins462;703C>T |
| 6 | human | 23059 | CLUAP1 | clusterin associated protein 1 | XR_001751874.2 | 51.3% | (many diffs) | |
| 7 | human | 23059 | CLUAP1 | clusterin associated protein 1 | XR_002957794.1 | 45.8% | (many diffs) | |
| 8 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | NM_029738.2 | 83.8% | 86.6% | (many diffs) |
| 9 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | XM_006522704.3 | 82.4% | 85% | (many diffs) |
| 10 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | XM_006522705.3 | 82.4% | 85% | (many diffs) |
| 11 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | XM_006522703.3 | 80.3% | 82.8% | (many diffs) |
| 12 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | XM_006522702.2 | 80.1% | 82.6% | (many diffs) |
| 13 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | XM_006522701.3 | 74.1% | 76.6% | (many diffs) |
| 14 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | XM_017317157.1 | 71.3% | 73.6% | (many diffs) |
| 15 | mouse | 76779 | Cluap1 | clusterin associated protein 1 | XM_006522706.3 | 46.5% | 46.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1269
- ORF length:
- 1203
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag agccctggga taccctcgac atatttctat ggaaaatttc cgtacaccca 121 attttggact tgtatctgaa gtgcttctct ggcttgtgaa aagatatgag ccccagactg 181 acatcccgcc tgacgtggat actgaacagg accgagtttt cttcattaag gcaattgccc 241 agttcatggc caccaaggca catataaaac tcaacactaa gaagctttat caagcagatg 301 ggtatgcggt aaaagagctg ctgaagatca catctgtcct ttataatgct atgaagacca 361 aggggatgga gggctctgaa atagtagagg aagatgtcaa caagttcaag tttgatcttg 421 gctcaaagat tgcagatttg aaggcagcca ggcagcttgc gtctgaaatc acctccaaag 481 gagcatctct gtatgacttg ctcggcatgg aagtagagtt gagggaaatg agaacagaag 541 ccattgccag acctctggaa ataaacgaga ctgaaaaagt gatgagaatt gcaataaaag 601 agattttgac acaggttcag aagactaaag acctgctcaa taatgtggcc tctgatgaag 661 ctaatttaga agccaaaatc gaaaagagaa aattagaact ggaaagaaat cggaagcgac 721 tagagactct gcagagtgtc aggccatgtt ttatggatga gtatgagaag actgaggaag 781 aattacaaaa gcagtatgac acttatctgg agaaatttca aaatctgact tatctggaac 841 aacagcttga agaccatcat aggatggagc aagaaaggtt tgaggaagct aaaaacactc 901 tctgccTGAT ACAGAACAAG CTCAAGGAGG AAGAGAAGCG CCTGCTCAAG AGTGGAAGTA 961 ACGATGACTC GGACATAGAC ATCCAGGAGG ACGATGAATC CGACAGTGAG TTGGAAGAAA 1021 GGCGGCTGCC CAAGCCACAG ACAGCCATGG AGATGCTCAT GCAAGGAAGA CCTGGCAAAC 1081 GCATTGTGGG CACGATGCAA GGTGGAGACT CCGATGACAA TGAGGACTCG GAGGAGAGTG 1141 AAATTGACAT GGAAGATGAT GATGACGAGG ATGACGATTT GGAAGACGAG AGCATTTCTC 1201 TCTCACCAAC CAAGCCCAAT CGAAGGGTCT GGAAATCTGA ACCCCTGGAT GAGAGTGACA 1261 ATGACTTCTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1321 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1381 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAGAGAA CGTGGGGCCA CATATGATAC 1441 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt