Construct: ORF TRCN0000473927
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011809.1_s317c1
- Derived from:
- ccsbBroadEn_05047
- DNA Barcode:
- AGATGATTGTCTCCCCACTGTCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC38A11 (151258)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473927
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 151258 | SLC38A11 | solute carrier family 38 me... | NM_001199148.1 | 100% | 100% | |
| 2 | human | 151258 | SLC38A11 | solute carrier family 38 me... | NM_001351538.1 | 100% | 100% | |
| 3 | human | 151258 | SLC38A11 | solute carrier family 38 me... | NM_173512.2 | 94.5% | 94.5% | 194_195ins66 |
| 4 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003458.2 | 93.9% | 93.9% | 681_758del |
| 5 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003459.2 | 88.8% | 88.8% | 194_195ins66;615_692del |
| 6 | human | 151258 | SLC38A11 | solute carrier family 38 me... | NM_001351537.1 | 87.8% | 87.8% | 1_168del |
| 7 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003457.2 | 85.2% | 83.8% | (many diffs) |
| 8 | human | 151258 | SLC38A11 | solute carrier family 38 me... | NM_001351539.1 | 83.7% | 83.7% | 0_1ins198 |
| 9 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003463.2 | 83.7% | 83.7% | 0_1ins198 |
| 10 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003455.2 | 83.1% | 83.1% | 1_168del;849_926del |
| 11 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_011510737.3 | 83.1% | 83.1% | 1_168del;362_363ins66 |
| 12 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003456.2 | 78.6% | 78.6% | 1_168del;362_363ins66;783_860del |
| 13 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_006712337.4 | 76.1% | 76.1% | 1_168del;687_688ins162 |
| 14 | human | 151258 | SLC38A11 | solute carrier family 38 me... | NM_001351540.1 | 65.7% | 65.7% | 0_1ins417 |
| 15 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_024452729.1 | 65.7% | 65.7% | 0_1ins417 |
| 16 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003460.1 | 64.9% | 64.1% | (many diffs) |
| 17 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003462.1 | 63.9% | 63.7% | (many diffs) |
| 18 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003461.2 | 63.2% | 63.3% | (many diffs) |
| 19 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003464.2 | 61.8% | 61.8% | 0_1ins417;264_341del |
| 20 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XM_017003465.2 | 61.8% | 61.8% | 0_1ins417;264_341del |
| 21 | human | 151258 | SLC38A11 | solute carrier family 38 me... | XR_001738648.1 | 52.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1287
- ORF length:
- 1218
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaagcaagct gggtttcctt tgggaatatt gcttttattc tgggtttcat 121 atgttacaga cttttccctt gttttattga taaaaggagg ggccctctct ggaacagata 181 cctaccagtc tttggtcaat aaaactttcg gctttccagg gtatctgctc ctctctgttc 241 ttcagttttt gtatcctttt atagcaatga taagttacaa tataatagct ggagatactt 301 tgagcaaagt ttttcaaaga atcccaggag ttgatcctga aaacgtgttt attggtcgcc 361 acttcattat tggactttcc acagttacct ttactctgcc tttatccttg taccgaaata 421 tagcaaagct tggaaaggtc tccctcatct ctacaggttt aacaactctg attcttggaa 481 ttgtaatggc aagggcaatt tcactgggtc cacacatacc aaaaacagaa gacgcttggg 541 tatttgcaaa gcccaatgcc attcaagcgg tcggggttat gtcttttgca tttatttgcc 601 accataactc cttcttagtt tacagttctc tagaagaacc cacagtagct aagtggtccc 661 gccttatcca tatgtccatc gtgatttctg tatttatctg tatattcttt gctacatgtg 721 gatacttgac atttactggc ttcacccaag gggacttatt tgaaaattac tgcagaaatg 781 atgacctggt aacatttgga agattttgtt atggtgtcac tgtcattttG ACATACCCTA 841 TGGAATGCTT TGTGACAAGA GAGGTAATTG CCAATGTGTT TTTTGGTGGG AATCTTTCAT 901 CGGTTTTCCA CATTGTTGTA ACAGTGATGG TCATCACTGT AGCCACGCTT GTGTCATTGC 961 TGATTGATTG CCTCGGGATA GTTCTAGAAC TCAATGGTGT GCTCTGTGCA ACTCCCCTCA 1021 TTTTTATCAT TCCATCAGCC TGTTATCTGA AACTGTCTGA AGAACCAAGG ACACACTCCG 1081 ATAAGATTAT GTCTTGTGTC ATGCTTCCCA TTGGTGCTGT GGTGATGGTT TTTGGATTCG 1141 TCATGGCTAT TACAAATACT CAAGACTGCA CCCATGGGCA GGAAATGTTC TACTGCTTTC 1201 CTGACAATTT CTCTCTCACA AATACCTCAG AGTCTCATGT TCAGCAGACA ACACAACTTT 1261 CTACTTTAAA TATTAGTATC TTTCAATTGC CAACTTTCTT GTACAAAGTG GTTGATATCG 1321 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1381 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAGATGATT 1441 GTCTCCCCAC TGTCCTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1501 aagatt