Construct: ORF TRCN0000474099

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018905.2_s317c1
Derived from:
ccsbBroadEn_15059
DNA Barcode:
ACCCTCCAAGATTTCTGCGAAGAC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TNNI3K (51086)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474099
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51086 TNNI3K TNNI3 interacting kinase NM_015978.3 99.5% 70.2% (many diffs)
2 human 100526835 FPGT-TNNI3K FPGT-TNNI3K readthrough NM_001112808.2 87.1% 60.7% (many diffs)
3 human 100526835 FPGT-TNNI3K FPGT-TNNI3K readthrough NM_001199327.1 76% 67.2% (many diffs)
4 mouse 435766 Tnni3k TNNI3 interacting kinase NM_177066.5 84.6% 64.5% (many diffs)
5 mouse 435766 Tnni3k TNNI3 interacting kinase XM_011240154.1 73.6% 73.7% (many diffs)
6 mouse 435766 Tnni3k TNNI3 interacting kinase XM_011240155.1 73.6% 73.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1833
ORF length:
1764
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggaaattat aaatctagac caacccaaac ttgtactgat gaatggaaga
121aaaaagtcag tgaatcatat gttatcacaa tagaaagatt agaagatgac ctgcagatca
181aggaaaaaga actgacagaa ctaaggaata tatttggctc tgatgaagcc ttcagtaaag
241tcaatttaaa ttaccgcact gaaaatgggc tgtctctact tcatttatgt tgcatttgtg
301gaggcaagaa atcacatatt cgaactctta tgttgaaagg gctccgccca tctcgactga
361caagaaatgg atttacagcc ttgcatttag cagtttacaa ggataatgca gaattgatca
421cttctctgct tcacagtgga gctgatatac agcaggttgg atacggtggc ctcactgccc
481tccatattgc tacaatagct ggccacctag aggctgctga tgtgctgttg caacatggag
541ctaatgtcaa tattcaagat gcagtttttt tcactccatt gcatattgca gcgtactatg
601gacatgaaca ggtaactcgc cttcttttga aatttggtgc tgatgtaaat gtaagtggtg
661aagttggaga tagacccctc cacctagcat ctgcaaaagg attcttgaat attgcaaaac
721tcttgatgga agaacgcagc aaagcagatg tgaatgctca agataatgaa gaccatgtcc
781cactccattt ctgttctcga tttggacacc atgatatagt taagtatctg ctgcaaagtg
841atttggaagt tcaacctcat gttgttaata tctatggaga taccccctta cacctggcat
901gctacaatgg caaatttgaa gttgccaagg aaatcatcca aatatcagga acagaaagtc
961tgactaagga aaacatcttc agtgaaacag cttttcatag tgcttgtacc tatggcaaga
1021gcattgacct agtcaaattt cttcttgatc agaatgtcat aaacatcaac caccaaggaa
1081gggatgggca cactggatta cactctgctt gctaccacgg tcacattcgc ctggttcagt
1141tcttactgga taatggagct gatatgaatc tagtggcttg tgatcccagc aggtctagtg
1201gtgaaaaaga tgagcagaca tgtttgatgt gggcttatga aaaagggcat gatgccattg
1261tcacactcct gaagcattat aagagaccac aagatgaatt gccctgtaat gaatattctc
1321agcctggagg agatggctcc tatgtgtctg ttccatcacc cttggggaag attaaaagca
1381tgacaaaaga gaaggcagat attctcctcc taagagctgg attgccttca catttccatc
1441ttcagctctc agaaattgag ttccatgaga ttattggctc aggttctttt gggaaagtat
1501ataaaggacg atgcagaaat aaaatagtgg ctataaaacg ttatcgagcc aatacctact
1561gctccaagtc agatgtggat atgttttgcc gagaggtgtc cattctctgc cagctcaatc
1621atccctgcgt aattcagttt gtgggtgctt gcttgaatga tcccagccag tttgccattg
1681tcactcaata catatcaggg ggttctctgt tctccctcct tcatgagcag aagaggattc
1741ttgatttgca gtctaaatta attattgcag tagatgttgc caaaggcatg gagtaccttc
1801acaacctgac acagccaatt atacatcgtg actgaaacag tcacatattt ctttctctat
1861gaggatgggc atgctgtgtg ggcagatttt gagaaatcaa gatttctaca gtctctggat
1921gaagacaaca tgacaaaaca acctgggaac ctccgttgga tggctcntga ggtgttcacg
1981cagtgcactc ggtacaccat caaagcagat gtcttcagct atgctctgtg tctgtgggaa
2041attctcactg gcgaaattcc attcgctcat ctcaagccag cggctgcggc agcagacatg
2101gcttaccacc acatcagacc tcccattggc tattccattc ccaagcccat atcatctctg
2161ctGATACGAG GGTGGAACGC ATGTCCTGAA GGAAGACCCG AATTTTCTGA AGTTGTCATG
2221AAGTTAGAAG AGTGTCTCTG CAACATTGAG CTGATGTCTC CTGCATCAAG TAACAGCAGT
2281GGGTCTCTCT CACCTTCTTC TTCTTCTGAT TGCCTGGTGA ACCGGGGAGG ACCTGGCCGG
2341AGTCATGTGG CAGCATTAAG AAGTCGTTTC GAATTGGAAT ATGCTCTAAA TGCAAGGTCC
2401TATGCTGCTT TGTCCCAAAG TGCTGGACAA TATTCCTCTC AAGGTCTGTC TTTGGAGGAG
2461ATGAAAAGAA GTCTTCAATA CACACCCATT GACAAATATG GCTATGTATC CGATCCCATG
2521AGCTCAATGC ATTTTCATTC TTGCCGAAAT AGTAGCAGCT TTGAGGACAG CAGCTTGCCA
2581ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC
2641GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT
2701ATATCTTGTG GAAAGGACGA ACCCTCCAAG ATTTCTGCGA AGACACGCGT TAAGTCgaca
2761atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)