Construct: ORF TRCN0000474139
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009602.1_s317c1
- Derived from:
- ccsbBroadEn_13776
- DNA Barcode:
- AGACTGTCCAGGAGAAAGGACAAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474139
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_002956199.1 | 1.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 248
- ORF end:
- 446
- ORF length:
- 198
- Sequence:
-
1 TGGAGTACGT CGTCTTTAGG TTGGGGGGAG GGGTTTTATG CGATGGAGTT TCCCCACACT 61 GAGTGGGTGG AGACTGAAGT TAGGCCAGCT TGGCACTTGA TGTAATTCTC CTTGGAATTT 121 GCCCTTTTTG AGTTTGGATC TTGGTTCATT CTCAAGCCTC AGACAGTGGT TCAAAGTTTT 181 TTTCTTCCAT TTCAGGTGTC GTGAGGCTAG CATCGATTGA TCAACAAGTT TGTACAAAAA 241 AGTTGGCATG GGGTCTCATT CTGTCACCCA GGCTGGAGTG CAGCAGTGCC ATCTCAGCTC 301 ACTGCAACCT CCACCTCTAC GCTCAAGCAA TCCTCCCACC TCAGCCTCCC AAGTAGCTGA 361 GACCACAGGC ACGCACCACC ACACCTGGCT AATTTTTTGT GATTTTGGTA GAGACAGGGT 421 TTCGCCATGT TGCCCAGGCT GGTCTTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG 481 TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA 541 ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG AAGACTGTCC 601 AGGAGAAAGG ACAAAACGCG TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa 661 agatt