Construct: ORF TRCN0000474445

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001799.1_s317c1
Derived from:
ccsbBroadEn_03469
DNA Barcode:
TTCGACGTAGATCTATGGGCGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD49 (54851)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474445
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54851 ANKRD49 ankyrin repeat domain 49 NM_017704.3 100% 100%
2 human 54851 ANKRD49 ankyrin repeat domain 49 XM_017017941.1 100% 100%
3 mouse 56503 Ankrd49 ankyrin repeat domain 49 NM_001348260.1 88.2% 87.4% (many diffs)
4 mouse 56503 Ankrd49 ankyrin repeat domain 49 NM_019683.4 88.2% 87.4% (many diffs)
5 mouse 56503 Ankrd49 ankyrin repeat domain 49 XM_006510503.2 88.2% 87.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
783
ORF length:
717
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga aaaagaaaaa ggaaatgatg atggaatacc agaccaagag aattccttgg
121atttttctga acactttaac caacttgaat tgttggaaac acatggacac cttattccta
181ctggtactca aagtctttgg gtaggcaatt ctgatgaaga tgaggagcaa gatgacaaaa
241atgaagagtg gtatcgattg caagaaaaaa aaatggaaaa agacccaagc agattgcttc
301tttgggctgc tgaaaaaaat cggcttacca cagtgcggag actcctttct gaaaaggcca
361ctcacgtgaa cactagggat gaagatgagt atacccctct tcatcgagca gccTACAGTG
421GACACTTAGA TATTGTTCAG GAGCTCATTG CACAGGGGGC CGATGTTCAT GCAGTGACTG
481TGGATGGCTG GACGCCCCTG CACAGTGCTT GTAAGTGGAA TAATACCAGA GTGGCTTCTT
541TCTTACTGCA GCATGATGCA GATATCAATG CCCAAACAAA AGGCCTCTTG ACCCCCTTGC
601ATCTTGCTGC TGGGAACAGA GACAGCAAGG ATACCCTAGA ACTCCTCCTG ATGAACCGTT
661ACGTCAAACC AGGGCTGAAA AACAACTTGG AAGAAACTGC ATTTGATATT GCCAGGAGGA
721CAAGTATCTA TCACTACCTC TTTGAAATTG TGGAAGGCTG TACAAATTCT TCACCTCAGT
781CTTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
841TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
901GGCTTTATAT ATCTTGTGGA AAGGACGATT CGACGTAGAT CTATGGGCGT GCACGCGTTA
961AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)