Construct: ORF TRCN0000474462

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017619.1_s317c1
Derived from:
ccsbBroadEn_02064
DNA Barcode:
GATCCTGCTCCCCCCCCCGGTTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SOCS3 (9021)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474462
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9021 SOCS3 suppressor of cytokine sign... NM_003955.4 100% 100%
2 mouse 12702 Socs3 suppressor of cytokine sign... NM_007707.3 90.8% 96.8% (many diffs)
3 mouse 12702 Socs3 suppressor of cytokine sign... XM_011248707.2 90.8% 96.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
741
ORF length:
675
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt cacccacagc aagtttcccg ccgccgggat gagccgcccc ctggacacca
121gcctgcgcct caagaccttc agctccaaga gcgagtacca gctggtggtg aacgcagtgc
181gcaagctgca ggagagcggc ttctactgga gcgcagtgac cggcggcgag gcgaacctgc
241tgctcagtgc cgagcccgcc ggcacctttc tgatccgcga cagctcggac cagcgccact
301tcttcacgct cagcgtcaag acccagtctg ggaccaagaa cctgcgcatc cagtgtgagg
361ggggcagctt ctctctgcag agcgatcccc ggagcacgca gcccgtgccc cgcttcgact
421gcgtgctcaa gctggtgcac cactacatgc cgccccctgg agccccctcc ttcccctcgc
481cacctactga accctcctcc gaggtgcccg agcagccgtc tgcccagcca ctccctggga
541gtccccccag aagagcctat tacatctact ccgggggcga gaagatcccc ctggtgttga
601gccggcccct ctcctccaac gtggccactc TTCAGCATCT CTGTCGGAAG ACCGTCAACG
661GCCACCTGGA CTCCTATGAG AAAGTCACCC AGCTGCCGGG GCCCATTCGG GAGTTCCTGG
721ACCAGTACGA TGCCCCGCTT TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
781CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
841AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGATC CTGCTCCCCC
901CCCCGGTTTT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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