Construct: ORF TRCN0000474514

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000969.1_s317c1
Derived from:
ccsbBroadEn_08133
DNA Barcode:
GTCATTAATATCCTCTCTTTTACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM216A (29902)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474514
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29902 FAM216A family with sequence simila... NM_013300.3 99.8% 100% 762A>G
2 human 29902 FAM216A family with sequence simila... XM_011538246.3 83.3% 83.1% (many diffs)
3 human 29902 FAM216A family with sequence simila... XM_005253875.5 65.4% 65.5% 0_1ins282;480A>G
4 human 29902 FAM216A family with sequence simila... XM_024448959.1 65.4% 65.5% 0_1ins282;480A>G
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
885
ORF length:
819
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct gggacagctg ctcccgcaca cggctcgcgg tctcggcgcc gcggagatgc
121ccggccaggg tccggggtcc gactggacgg agcgtagctc ttctgcagag ccgcccgctg
181tggccgggac cgagggtggc ggcggcggat cagctggata ctcttgttac cagaattcca
241aaggttctga tagaatcaaa gatggataca aagtgaactc acacatagct aagctgcaag
301agttatggaa aactccccaa aatcaaacaa tccacctctc taaatcaatg atggaggcgt
361cctttttcaa gcatccagac ctcaccacag gccagaagcg ttacctgtgc agcattgcta
421aaatctataa tgcaaactat ctgaagatgt taatgaagag gcagtacatg cacgtacttc
481agcacagctc acaaaagcca ggtgTCCTCA CTCATCACAG AAGCCGCCTT AGCTCCCGTT
541ACTCACAGAA ACAGCATTAC CCTTGCACTA CATGGCGACA TCAACTGGAG AGAGAGGACT
601CGGGGTCTTC TGATATCGCA GCTGCATCTG CACCTGAAAT GCTCATACAG CATTCCCTTT
661GGCGGCCAGT GAGAAACAAA GAAGGGATAA AAACTGGATA TGCATCTAAA ACAAGATGTA
721AGTCACTGAA GATTTTTAGA AGACCAAGGA AACTGTTCAT GCAAACAGTT TCTTCAGATG
781ATTCTGAATC ACACATGAGT GAAGAAAAAA AGGAAGAAGA TTTACTGAAT AATTTTATGC
841AATCAATGTC AATTGAAGAA CAGGGAGAAC ATCTGATGTT AACTTGCCCA ACTTTCTTGT
901ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
961AGTAATGAAC TAGCCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1021GAAAGGACGA GTCATTAATA TCCTCTCTTT TACCACGCGT TAAGTCgaca atcaacctct
1081ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)