Construct: ORF TRCN0000474670
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003308.1_s317c1
- Derived from:
- ccsbBroadEn_13751
- DNA Barcode:
- TATTCCCTCTGCATACCTACTGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMCX4 (100131755)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474670
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100131755 | ARMCX4 | armadillo repeat containing... | NR_045861.2 | 16.4% | (many diffs) | |
| 2 | human | 100131755 | ARMCX4 | armadillo repeat containing... | NR_045864.2 | 16.3% | (many diffs) | |
| 3 | human | 100131755 | ARMCX4 | armadillo repeat containing... | NR_028407.3 | 13.1% | (many diffs) | |
| 4 | human | 100131755 | ARMCX4 | armadillo repeat containing... | NM_001256155.2 | 10.4% | 10.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1110
- ORF length:
- 1044
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc tgctgcaggg cttaagatca ctggaagcaa agaaacaaag aggagattgc 121 tcctgatcag tatagactgg gtgtattgcc aagagaagca agaggagagg agggaactgc 181 ctcggatcat tacaggtcca cctccagagg cagctgtagt ggcctttgag tggctgaaga 241 ccagcaccct cacaggccta cacccacaac taccactctc tttaccccag cccgagtgcg 301 ctctaccata ccttgttcgt gcttttagca ggggtgatta catgggccgc attcaggaag 361 tgggctgggt gactgcagga ctggtgatct gggctggcac ctgctactac atttacaaat 421 ttaccaaggg aagagcccag agtgtgagga ctcttgccag aaatggatcc acagttaaga 481 tggagactgt ggttggggta cagagccaga ccttggccat aaatgaagca gagattaaga 541 ctaaacccca agtcgagatt ggagcagaaa ctggagcaag aagtgggcct GGGGCTGAAG 601 TAGAGACCAA GGCCACTGCT ATAGCCATAC ACAGAGCCAA CTCTCAGGCC AAGGCAATGG 661 TTGGGGCAGA GCCAGAGACT CAATCTGAGT CCAAAGTGGT GGCTGGAACA CTGGTCATGA 721 CAGAGGCAGT GACTCTGACT GAGGTCAAGG CCAAAGCCAG GGAAGTGGCC ATGAAAGAAG 781 CAGTGACCCA AACTGATGCT GAGGCTGGCA AAATAGTTAA GAAAGAAGCA GTGACACAGA 841 CCAAGGCTAA AGCTTGGGCG CTGGTTGCCA AGACAGAGGC CAAGAGAGAA GCAATGACCC 901 AGACCAAAGC TGAAACTCAT ATATTGGCTG AAAAAGAGAC AGAGATTAAC AGAGTAATGG 961 TTACACAGAG TGAGACCTTG GCAGTACCCA GGGAAGTGGC CAAGATGGGG GCCACGAACA 1021 AGACTGGAAT TGTGGATGAA ACCAAGACAA GAGCTCTGGA AGAGACTGTG TTGATCCCAA 1081 GAGCATTCCC CAGTAAAAAC GCTTCATGCT GCCCAACTTT CTTGTACAAA GTGGTTGATA 1141 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1201 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATATTC 1261 CCTCTGCATA CCTACTGTCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1321 tgaaagatt