Construct: ORF TRCN0000474795

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008575.1_s317c1
Derived from:
ccsbBroadEn_02935
DNA Barcode:
CTTCGGCACCAAAATCACTTGTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRC29 (26231)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474795
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26231 LRRC29 leucine rich repeat contain... NM_001004055.1 100% 100%
2 human 26231 LRRC29 leucine rich repeat contain... NM_001365158.1 100% 100%
3 human 26231 LRRC29 leucine rich repeat contain... NM_001365159.1 100% 100%
4 human 26231 LRRC29 leucine rich repeat contain... NM_012163.2 100% 100%
5 human 26231 LRRC29 leucine rich repeat contain... XM_017023131.1 100% 100%
6 human 26231 LRRC29 leucine rich repeat contain... XM_017023134.1 100% 100%
7 human 26231 LRRC29 leucine rich repeat contain... XM_017023130.1 90.2% 73.9% 1_7delATGCAGG;147_211del
8 human 26231 LRRC29 leucine rich repeat contain... XM_017023126.1 66.3% 66.3% 140_478del
9 human 26231 LRRC29 leucine rich repeat contain... XM_017023127.1 66.3% 66.3% 140_478del
10 human 26231 LRRC29 leucine rich repeat contain... XM_017023128.1 66.3% 66.3% 140_478del
11 human 26231 LRRC29 leucine rich repeat contain... XM_017023129.1 66.3% 66.3% 140_478del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
735
ORF length:
669
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgta cagctctggg tggcctgcag gagctgcaga gcctcgacat ggccgagggc
121gggaactggc ccaggccctg ggctgtatgc acggggctcc atcccagctg gcctccctca
181gcctggccca ctgctcttca ttgaagtcac gcccagagct ggagcatcag gcctcaggta
241ccaaggacgc ctgtccagag ccacagggcc cctccctgct cacgctgcgg gccctgcagg
301agttggacct cacagcctgc agcaagctga ctgatgccag tttagccaag gtgctccagt
361ttctccagct gaggcagctg tcccTTAGCC TGTTGCCAGA ACTCACAGAC AACGGCTTGG
421TTGCTGTGGC CAGGGGCTGT CCTAGCCTGG AGCACTTGGC GCTGAGTCAC TGCAGCCGAC
481TCAGTGACAA GGGCTGGGCC CAGGCAGCCA GCTCCTGGCC AAGGCTGCAG CATCTCAACC
541TGTCCAGCTG CAGTCAGCTC ATAGAGCAGA CACTGGATGC TATTGGGCAG GCGTGCAGGC
601AGCTCCGGGT GTTGGATGTG GCCACGTGCC CTGGCATCAA CATGGCCGCC GTCAGACGCT
661TCCAAGCCCA GCTGCCCCAG GTGTCCTGTG TCCAGTCCCG CTTCGTGGGA GGGGCTGACC
721TGACCCTAAC ACTCTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
781CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
841TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CTTCGGCACC AAAATCACTT
901GTCCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)