Construct: ORF TRCN0000474798

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009217.1_s317c1
Derived from:
ccsbBroadEn_08051
DNA Barcode:
AGTAAACGAACTCCATTACTATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LAMP3 (27074)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474798
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27074 LAMP3 lysosomal associated membra... NM_014398.4 99.7% 99.5% 95A>G;267G>A;952A>G
2 human 27074 LAMP3 lysosomal associated membra... XM_005247360.5 92.4% 91.8% (many diffs)
3 human 27074 LAMP3 lysosomal associated membra... XM_006713586.3 86.8% 86.1% (many diffs)
4 human 27074 LAMP3 lysosomal associated membra... XM_024453453.1 86.8% 86.1% (many diffs)
5 human 27074 LAMP3 lysosomal associated membra... XM_011512688.2 82.2% 75% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1314
ORF length:
1248
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc ccggcagctc agcgcggcgg ccgcgctctt cgcgtccctg gccgtaattt
121tgcacgatgg cagtcaaatg agagcaaaag catttccagg aaccagagat tattctcaac
181ctactgcagc agcaacagta caggacataa aaaaacctgt ccagcaacca gctaagcaag
241cacctcacca aactttagca gcaagattca tggatggtca tatcaccttt caaacagcgg
301ccacagtaaa aattccaaca actaccccag caactacaaa aaacactgca accaccagcc
361caattaccta caccctggtc acaacccagg ccacacccaa caactcacac acagctcctc
421cagttactga agttacagtc ggccctagct tagcccctta ttcactgcca cccaccatca
481ccccaccagc tcatacaact ggaaccagtt catcaaccgt cagccacaca actgggaaca
541ccactcaacc cagtaaccag accacccttc cagcaacttt atcgatagca ctgcacaaaa
601gcacaaccgg tcagaagcct gttcaaccca cccatgcccc aggaacaacg gcagctgccc
661acaataccac ccgcacagct gcacctgcct ccacggttcc tgggcccacc cttgcacctc
721agccatcgtc agtcaagact ggaatttatc aggttctaaa cggaagcaga ctctgtataa
781aagcagagat ggggatacag ctgattgttc aagacaagga gtcggttttt tcacctcgga
841gatacttcaa catcgacccc aacgcaacgc aagcctctgg gaactgtggc acccgaaaat
901ccaaccttct gttgaatttt cagggcggat ttgtgaaTCT CACATTTACC AAGGATGAAG
961AATCATATTA TATCAGTGAA GTGGGAGCCT ATTTGACCGT CTCAGATCCA GAGACAGTTT
1021ACCAAGGAAT CAAACATGCG GTGGTGATGT TCCAGACAGC AGTCGGGCAT TCCTTCAAGT
1081GCGTGAGTGA ACAGAGCCTC CAGTTGTCAG CCCACCTGCA GGTGAAAACA ACCGATGTCC
1141AACTTCAAGC CTTTGATTTT GAAGATGACC ACTTTGGAAA TGTGGATGAG TGCTCGTCTG
1201ACTACACAAT TGTGCTTCCT GTGATTGGGG CCATCGTGGT TGGTCTCTGC CTTATGGGTA
1261TGGGTGTCTA TAAAATCCGC CTAAGGTGTC AATCATCTGG ATACCAGAGA ATCTACCCAA
1321CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1381ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1441TATCTTGTGG AAAGGACGAA GTAAACGAAC TCCATTACTA TTGACGCGTT AAGTCgacaa
1501tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)