Construct: ORF TRCN0000474880
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011620.1_s317c1
- Derived from:
- ccsbBroadEn_06576
- DNA Barcode:
- TACCGATGTCCTGATGTACACCAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MEP1A (4224)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474880
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4224 | MEP1A | meprin A subunit alpha | NM_005588.3 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 4224 | MEP1A | meprin A subunit alpha | XM_011514628.1 | 96.2% | 96.1% | (many diffs) |
| 3 | human | 4224 | MEP1A | meprin A subunit alpha | XM_011514629.2 | 93.7% | 92.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2307
- ORF length:
- 2238
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcttggatt agatccactt gcattctctt ttttaccttg ctttttgccc 121 acatagcagc tgtaccgatt aagtatcttc ctgaagaaaa tgtacatgat gcagattttg 181 gtgaacagaa ggatatttca gaaatcaatt tagctgcagg cttggacctc tttcaagggg 241 acatcctctt gcagaaatcc agaaatggcc tgagagaccc aaacaccagg tggacgttcc 301 ccattcctta catcttggct gataatttgg ggctgaatgc taaaggagcc attctgtatg 361 cctttgagat gttccgtctc aagtcctgtg tggatttcaa gccctatgaa ggagagagct 421 catatatcat atttcaacag tttgatgggt gctggtctga ggttggtgac caacatgtgg 481 gacagaacat ttccattggc caaggatgtg cctataaggc catcatagaa cacgagatcc 541 tgcatgcttt gggattttac cacgagcagt caaggacgga ccgggatgat tatgtgaaca 601 tctggtggga ccaaattctt tcaggttacc agcacaactt tgacacctat gatgatagct 661 taatcacaga cctcaataca ccctatgatt atgagtcttt gatgcactac cagcctttct 721 catttaacaa gaatgcaagt gttcccacca tcacagccaa gatccctgag tttaactcca 781 ttatcggaca acgcctggat ttcagtgcca ttgatttaga gaggctgaac cgaatgtaca 841 attgcaccac aactcacact cttttggacc actgtacttt tgagaaggca aacatctgtg 901 gaatgattca gggcaccaga gatgacactg actgggccca tcaggacagt gctcaggctg 961 gagaagtgga tcacaccttg ttgggacaat gcacaggtgc cggctacttc atgcagttca 1021 gcaccagctc ggggtccgcg gaagaggcag ccctactgga gtctcggatt ctttacccaa 1081 agaggaagca gcagtgcctg caatttttct ataaaatgac gggaagtcct tcagacagac 1141 tcgttgtctg ggtcaggagg gatgacagca caggcaatgt tcgcaagttg gtgaaggtgc 1201 agacttttca aggagatgat gaccacaatt ggaaaattgc ccatgtggtg ctcaaagagg 1261 aacagaagtt tcgctacctt ttccagggca caaaaggcga ccctcagaac tcaactgggg 1321 gaatttacct agatgacatc actctgacag aaaccccctg ccccacaggg gtctggacag 1381 tccggaattt ctcccaagtc cttgagaaca ccagcaaagg ggacaagctt cagagccctc 1441 gattctacaa ttcggaggga tatggttttg ggttaacttt atacccaaat agcggagaaa 1501 gctctggtta cttgagactt gcttttcatg tgtgcagtgg ggagaacgat gctatcctgg 1561 agtggccggt agaaaacaga caggtgataa ttaccatcct tgaccaggag cctgatgtcc 1621 ggaacaggat gtcctcaagc atggtgttca ctacctcgaa gtcgcacaca tctccagcga 1681 taaatgacac tgtcatctgg gacaggccgt ccagggtggg aacctatcat acagactgta 1741 attgttttag aagcatcgac ttgggctgga gtggtttcat ttcccaccaa atgctgaaaa 1801 ggaggagttt cctgaaaaat gatgacctca tcatatttgt ggactttgaa gatatcaccc 1861 acctcagcca gactgaagtt cccactaaag gcaaaagact gagcccccaa ggcctcattc 1921 tccaaggcca ggagcagcag gtctccgaag aaggttcggg aaaggccatg ttagaggaag 1981 ccctacctgt cagcctgagc caggggcagc ccagccgaca gaagcggtcg gtggagaaca 2041 caggccccct GGAGGACCAT AACTGGCCAC AGTACTTCAG AGACCCATGT GACCCAAACC 2101 CTTGCCAAAA TGACGGCATC TGTGTGAACG TGAAGGGGAT GGCGAGCTGC AGGTGCATCT 2161 CTGGACATGC TTTCTTCTAC ACGGGGGAGC GCTGTCAGGC CGTGCAGGTG CACGGCAGTG 2221 TCCTGGGCAT GGTGATCGGA GGCACGGCTG GCGTGATCTT CTTGACCTTC TCCATCATCG 2281 CCATCCTTTC CCAAAGGCCA AGGAAGTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG 2341 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 2401 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATACCGATG 2461 TCCTGATGTA CACCATACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 2521 aagatt