Construct: ORF TRCN0000474914

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016126.1_s317c1
Derived from:
ccsbBroadEn_10067
DNA Barcode:
GGTGTGCCTGTGAGAGTCACCTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC178 (374864)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474914
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 374864 CCDC178 coiled-coil domain containi... NM_001105528.3 99.9% 99.7% 1394T>A;1801G>A
2 human 374864 CCDC178 coiled-coil domain containi... NM_001308126.3 97.2% 97% 1394T>A;1801G>A;2386_2457del
3 human 374864 CCDC178 coiled-coil domain containi... NM_001371120.1 97.2% 97% 1394T>A;1801G>A;2386_2457del
4 human 374864 CCDC178 coiled-coil domain containi... NM_001371121.1 97.2% 97% 1394T>A;1801G>A;2386_2457del
5 human 374864 CCDC178 coiled-coil domain containi... NM_198995.3 95.5% 95.3% 1394T>A;1801G>A;1818_1819ins114
6 human 374864 CCDC178 coiled-coil domain containi... XM_011525951.1 94.1% 94% 1394T>A;1801G>A;2238_2239ins150
7 human 374864 CCDC178 coiled-coil domain containi... XM_017025724.1 79% 78.9% (many diffs)
8 human 374864 CCDC178 coiled-coil domain containi... XM_017025725.1 79% 78.9% (many diffs)
9 human 374864 CCDC178 coiled-coil domain containi... XM_011525954.2 54.8% 54.7% 1394T>A;1408_1433del;1467_1468ins1160
10 human 374864 CCDC178 coiled-coil domain containi... XM_011525955.1 54.1% 53.9% 1394T>A;1410_1410delAins1192
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2670
ORF length:
2601
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gactgaaaac aagacagttt cctcttcttc cactagagat gatcaaacca
121atataggttt aacatgtcag gaagtaaagg ctctcagaga gaaggcatgg tcaaggacaa
181atgaaggcaa tgccatgtct caaagtttgg ttctatatgg agcctctaag gagaacagtg
241aaggttttca tgaaagtaaa atgacaaata ctgaaggggt gaataaaggc atttacttta
301gctacccatg tcgacgtcac agctgtgccg tagtaaatat tccagcacct tgtgtcaaca
361aaatgatttc acacatccaa gatgtggagt ccaaaataca ggagcatttg aaaaggtttg
421aaacttcttt tgaagaatgg agcagaactt cttccacaaa agacctgaaa gaagattgga
481gtgtaactac accagtgaaa gaggtcaaac caggagaaaa gagagatgaa aagtgtccag
541agttaaagca ggaaatggaa acattgctct cagaggccat tcgtctcatt aaaagtctag
601aaactgaccg ggcagacgct gaagaagctt taaaacaaca gagatcaaga aagaatatga
661ttaacatgaa aattgactct tggtcagtct ggaaacttca agaactccca ttggctgtgc
721agaaagaaca tgaggcctat ttgagtgatg ttatagaatt acaatggcat cttgaagata
781aagctaatca actacaacat tttgaaaaac aaaagacaga gttagaagaa gcaaatgcaa
841agattcaagc agacatagac tacatgaatg aacatggccc tctactggac tctaagcaga
901atcaggaact tcaagatctg aagaaccatt ataaaaaaaa aatggaggta atggacctac
961acagaaaagt taatgaagaa cttgaagaag ctttagaagc ctgtgaaaat gccagattga
1021aggctcagca aattaaagaa gagattgata aggatattta ccaggatgaa aaaaccatag
1081aggcctacaa gagagagata tatcaactta acagtctatt tgatcattac tcttcatcag
1141tgataaatgt taatactaat attgaggaga aggaagagga agtgactgaa gcaataaggg
1201aaacaaagtc atcaaaaaat gaattacatt ctctatcaaa aatgctggaa gatttgagaa
1261gagtttatga ccaactaacc tggaagcaaa aaagtcatga aaatcagtat ctggaagcag
1321ttaatgattt ttatgctgca aaaaaaacat gggatattga gctttctgat gttgcaaaag
1381atttttcagc tatttctttg gcatgtacaa aactgacgga agacaataaa aaacttgaga
1441ttgatattaa caaaataaca gaaaaaacca atgaaagcat acggaaaaaa tcaaaatacg
1501aatctgaaat aaaatatttg acaataatga agttaaagaa tgataaacat ctcaagaaca
1561tctataagga ggcttatcgc attggtactc ttttccacct aaccaaacac aagacagatg
1621aaatggaaga taaaatagca gaagtgagaa gaaagttcaa gggtagagaa gaattcctga
1681aaaaactcac tcaaggtgaa gtggctgctg gaatggtgct tcagaaaaaa ctatattcca
1741tttacgaagt ccaggcactt gagcggaaag agcttataaa aaatagagca atatgtgcca
1801tgtcactggc agaactacag gaacctctgc ttcaactaga agatgaagct gaaagaatca
1861gaagtctcaa caaagaacat tctgttatgc ttaataatat aattgatcag aaagatctta
1921ttagaagaaa ggtgggaaaa gtaaagaaaa aattacgaaa aaaggggaag aaaacccttg
1981atgcattaat agaaactgag agtaaacgct cagcaatttt taaagaccta gaagcaacta
2041aaagtaagac aatgattttt tatgcaaaaa taaatgaatt gaatgaggAA TTAAAAGCAA
2101AAGAAGAAGA AAAGAAAAGT TTTGATCAGA CACTTGAAAT ATTAAAGAAC AAATTTATAA
2161CTATGAGATT TAAAAGGGAA CATGCACAAA CTGTGTTTGA TCATTATATG CAAGAGAAAA
2221AAGACTGTGA AGAGAGAATC TTTGAGGAAG ATCAGAGATT TAGAGTGCTC CTTGCTGTAA
2281GACAAAAAAC TCTTCAAGAT ACCCAAAAAA TAATAGCTGA TTCACTTGAA GAAAATCTGC
2341GTTTAGCTCA AGAGTATCAA CAGCTACAGA TTACATTCTT AAAAGAAAAG GACAATTATT
2401TCAATATATA TGATAAACAG CTATCACTTG ATACTTCAAT TAGAGATAAG AAACAGCTCT
2461GTCAGCTGCA GAGAAGGATG CACACACTGT GGCAGGAGCA CTTCAAACTG GTGGTCCTCT
2521TCAGCCAGAT GAGGCTGGCC AACTTCCAGA CAGACTCTCA GGAGAGTATT CAGAAAATAT
2581TAGCTGTGCA GGAGGAATCT TCAAATTTAA TGCAACACAT CTTAGGTTTC TTCCAGACTT
2641TGACAGATGG CACATGCGAA AACGATGGTT TGCCAACTTT CTTGTACAAA GTGGTTGATA
2701TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
2761CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGGTGT
2821GCCTGTGAGA GTCACCTACA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
2881tgaaagatt

Download FASTA (ORF) (Full)