Construct: ORF TRCN0000475057
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013220.1_s317c1
- Derived from:
- ccsbBroadEn_15756
- DNA Barcode:
- TGTTTCACAGGGTCCGTAATAGCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TUT4 (23318)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475057
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000818.1 | 32.1% | 31.2% | (many diffs) |
| 2 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000817.1 | 30.8% | 30% | (many diffs) |
| 3 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000816.1 | 29.5% | 28.7% | (many diffs) |
| 4 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000815.2 | 29.2% | 28.4% | (many diffs) |
| 5 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_011541101.2 | 28.6% | 27.8% | (many diffs) |
| 6 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_011541100.2 | 23.2% | 22.6% | (many diffs) |
| 7 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000814.2 | 21.4% | 20.8% | (many diffs) |
| 8 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000813.2 | 19.9% | 19.4% | (many diffs) |
| 9 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000812.2 | 19.9% | 19.3% | (many diffs) |
| 10 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000811.2 | 19.9% | 19.3% | (many diffs) |
| 11 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000810.2 | 19.8% | 19.2% | (many diffs) |
| 12 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_005270683.2 | 19.8% | 19.2% | (many diffs) |
| 13 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000809.2 | 19.7% | 19.2% | (many diffs) |
| 14 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000808.1 | 19.7% | 19.2% | (many diffs) |
| 15 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_005270682.2 | 19.6% | 19.1% | (many diffs) |
| 16 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_011541099.1 | 19.5% | 18.9% | (many diffs) |
| 17 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000807.2 | 19.3% | 18.8% | (many diffs) |
| 18 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000806.1 | 19.2% | 18.7% | (many diffs) |
| 19 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_006710500.1 | 19.2% | 18.6% | (many diffs) |
| 20 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000805.2 | 18.9% | 18.4% | (many diffs) |
| 21 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000804.2 | 18.8% | 18.2% | (many diffs) |
| 22 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_005270681.2 | 18.8% | 18.2% | (many diffs) |
| 23 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_017000803.1 | 18.7% | 18.2% | (many diffs) |
| 24 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_011541098.1 | 18.6% | 18.1% | (many diffs) |
| 25 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_005270680.3 | 18.5% | 17.9% | (many diffs) |
| 26 | human | 23318 | TUT4 | terminal uridylyl transfera... | NM_015269.2 | 18.4% | 17.9% | (many diffs) |
| 27 | human | 23318 | TUT4 | terminal uridylyl transfera... | NM_001009881.3 | 18.4% | 17.9% | (many diffs) |
| 28 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_005270679.2 | 18.4% | 17.9% | (many diffs) |
| 29 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_005270678.2 | 18.3% | 17.8% | (many diffs) |
| 30 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_005270676.2 | 18.3% | 17.8% | (many diffs) |
| 31 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_006710498.2 | 18.3% | 17.8% | (many diffs) |
| 32 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_006710499.3 | 18.3% | 17.8% | (many diffs) |
| 33 | human | 23318 | TUT4 | terminal uridylyl transfera... | XM_011541097.1 | 18.3% | 17.8% | (many diffs) |
| 34 | human | 23318 | TUT4 | terminal uridylyl transfera... | XR_001737074.2 | 17.2% | (many diffs) | |
| 35 | human | 23318 | TUT4 | terminal uridylyl transfera... | XR_001737073.1 | 15% | (many diffs) | |
| 36 | human | 23318 | TUT4 | terminal uridylyl transfera... | XR_002959846.1 | 12.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 993
- ORF length:
- 927
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga agagtctaaa accttaaaaa gtgaaaatca tgaaccaaag aagaatgtta 121 tttgtgaaga aagcaaagca gttcaagtta taggtaatca aacattgaaa gctagaaatg 181 ataaatccgt aaaagaaatt gagaacagct ctccaaatag gaatagtagt aaaaaaaata 241 agcaaaatga tatttgtata gaaaaaacag aagttaaatc atgtaaagta aatgctgcca 301 accttccagg tcctaaagat ttggggttag tccttcgaga tcaaagtcat tgcaaagcaa 361 aaaaatttcc taattcaccg gtgaaagccg aaaaggcaac catttcacag gcaaaatcag 421 aaaaggcaac cagtttacag gcaatagcag aaaaatcacc aaagtcacct aattcagtga 481 aagcagaaaa agcatccagt tatcagatga agtcagaaaa agtaccaagt tcaccagcag 541 aagcagaaaa gggacccagt ttactgttga aagacatgag acagaagaca gaattacaac 601 agattggaaa aaaaattcca agctccttta cTTCTGTGGA CAAAGTGAAT ATTGAAGCTG 661 TAGGGGGAGA AAAATGTGCT CTGCAAAACT CACCACGATC TCAGAAGCAA CAGACATGTA 721 CAGATAATAC TGGTGATTCT GATGATAGTG CTTCAGGAAT TGAAGACGTA TCGGACGATT 781 TAAGTAAAAT GAAGAATGAT GAATCTAATA AAGAAAATTC TTCAGAGATG GACTACTTAG 841 AAAATGCCAC TGTGATAGAT GAATCTGCAT TGACACCTGA GCAGAGGCTG GGGTTGAAAC 901 AAGCAGAAGA ACGCTTAGAA AGAGATCACA TCTTTCGACT TGAAAAAGTA TACTATGTTG 961 TTTTAGTTAT TTGGGGGGAA ATGTGTGTTT CATACCCAAC TTTCTTGTAC AAAGTGGTTG 1021 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1081 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATG 1141 TTTCACAGGG TCCGTAATAG CTACGCGTTA AGTCgacaat caacctctgg attacaaaat 1201 ttgtgaaaga tt