Construct: ORF TRCN0000475103

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018810.2_s317c1
Derived from:
ccsbBroadEn_14854
DNA Barcode:
CCAGGGCTCCCGAAATCACAGCCA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
AURKC (6795)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475103
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6795 AURKC aurora kinase C NM_001015878.2 99.7% 64% 159A>N;571_572insC
2 human 6795 AURKC aurora kinase C NM_001015879.2 93.5% 57.6% 1_1delAins58;102A>N;514_515insC
3 human 6795 AURKC aurora kinase C NM_003160.3 88.7% 53% 0_1ins102;57A>N;469_470insC
4 human 6795 AURKC aurora kinase C XR_430209.3 46.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
702
ORF length:
633
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gagctccccc agagctgtgg tgcagctggg caaagctcaa cctgcaggcg
121aagagttggc tacagcaaac caaacagccc agcagcccag cagcccagcc atgcggcgcc
181tcacagtcga tgactttgaa atcgggcgtc ccctgggcaa ggggaanttt gggaatgtgt
241acctggctcg gctcaaggaa agccatttca ttgtggccct gaaggttctc ttcaagtcgc
301agatagagaa ggaaggactg gagcaccagc tgcgccggga aattgagatc caggctcatc
361tacaacaccc caatatcctg cgcctgtata actatttcca tgatgcacgc cgggtgtacc
421tgattctgga atatgctcca aggggtgagc tctacaagga gctgcagaaa agcgagaaat
481tagatgaaca gcgcacagcc acgataatag aggagttggc agatgccctg acctactgcc
541atgacaagaa agtgattcac agagatatta agccagagaa cctgctgctg gggttcaggg
601gtgaggtgaa gattgcagat tttggctggt ctgtgcacac ccccctcccT GAGGAGGAAG
661ACAATGTGTG GGACACTGGA CTACTTGCCG CCAGAAATGA TTGAGGGGAG AACATATGAT
721GAAAAGGTGG ATTTGTGGTG CATTGGAGTG CTCTGCTATG AGCTGCTGGT GGGATATCCA
781CCCTTTGAGA GCGCCTCCCA CAGTGAGACT TACAGACGCA TCCTCAAGGT AGATGTGAGG
841TTTCCACTAT CAATGCCTCT GGGGGCCCGG GACTTGATTT CCAGGCTTCT CAGATACCAG
901CCCTTGGAGA GACTGCCCCT GGCCCAGATC CTGAAGCACC CCTGGGTTCA GGCCCACTCC
961CGAAGGGTGC TGCCTCCCTG TGCTCAGATG GCTTCCTTGC CAACTTTCTT GTACAAAGTG
1021GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA
1081ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC
1141GACCAGGGCT CCCGAAATCA CAGCCAACGC GTTAAGTCga caatcaacct ctggattaca
1201aaatttgtga aagatt

Download FASTA (ORF) (Full)

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