Construct: ORF TRCN0000475163

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014937.1_s317c1
Derived from:
ccsbBroadEn_09206
DNA Barcode:
TGATTCCGGCCTCAATAGGTTCTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZGPAT (84619)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475163
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84619 ZGPAT zinc finger CCCH-type and G... NM_001195654.1 99.9% 99.8% 1210G>A
2 human 84619 ZGPAT zinc finger CCCH-type and G... NM_001083113.1 98.1% 98% 844_870del;1237G>A
3 human 84619 ZGPAT zinc finger CCCH-type and G... NM_001195653.1 98.1% 98% 844_870del;1237G>A
4 human 84619 ZGPAT zinc finger CCCH-type and G... NM_181485.2 98.1% 98% 844_870del;1237G>A
5 human 84619 ZGPAT zinc finger CCCH-type and G... NM_032527.4 94.4% 94.3% 844_930del;1297G>A
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1572
ORF length:
1506
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga cgaggagagc ctggagtcgg ccttgcagac ctaccgtgcg cagctgcagc
121aggtggagct ggccttgggc gccggcctgg attcgtctga gcaggctgac ctgcgccagc
181tgcaggggga cctgaaggag ctcatcgagc tcaccgaggc cagcctggtg tctgtcagga
241agagcagctt gttggccgcg ctggacgaag agcgcccggg ccgccaggaa gatgctgagt
301accaggcttt ccgggaggcc atcactgagg cggtggaggc accagcagcg gcccgtgggt
361ccggatcaga gaccgttcct aaagcagagg cggggccaga atctgcggca ggtgggcagg
421aggaggaaga gggagaggac gaggaagagc tgagtgggac aaaggtgagc gcgccctact
481acagctcctg gggcactctg gagtatcaca acgccatggt ggtgggaacg gaagaggcgg
541aggatggctc ggcgggtgtc cgtgtgcttt acctgtaccc cactcacaag tctctgaagc
601cgtgcccgtt cttcctggag ggaaagtgcc gctttaagga gaactgcagg ttctcccatg
661ggcaggtggt ctctctggat gagctgcgcc ccttccagga cccagacctg agctccctgc
721aggccggctc tgcgtgtctg gccaagcacc aggatggcct ctggcacgca gcacgcatca
781ccgatgtgga caacggctac tacacagtca agtttgactc gctgctgctg agggaggccg
841tggtggaggg ggacggcatc ctgcccccac tgcgcacaga ggccacagag tccgactcag
901acagcgacgt ggtggggtca gatgctgtgg actctgggac ctgcagctct gcctttgctg
961gctgggaggt gcacacgcga gGTATAGGCT CCAGACTCCT CACCAAGATG GGCTATGAGT
1021TTGGCAAGGG TTTGGGCCGA CACGCGGAAG GCCGGGTGGA GCCCATCCAT GCTGTGGTGT
1081TGCCTCGAGG GAAGTCGCTG GACCAGTGTG TGGAGACCCT GCAGAAGCAG ACCAGGGTTG
1141GCAAGGCTGG CACCAACAAG CCCCCCAGGT GCCGGGGAAG AGGGGCCAGG CCTGGGGGCC
1201GCCCAGCTCC TCGGAATGTG TTTGACTTCC TCAATGAAAA GCTGCAAGGT CAGGCTCCTG
1261GGGCCCTAGA AGCCAGGGCG GCCCCAGCGG GGAGGAGGAG CAAGGACATG TACCATGCCA
1321GCAAGAGTGC CAAGCGGGCC CTGAGCCTGC GGCTCTTCCA GACTGAGGAG AAGATCGAGC
1381GAACCCAGCG GGACATCAGG AGCATCCAGG AGGCTCTCGC CCGCAACGCT GGCCGGCATA
1441GCGTGGCGTC AGCCCAGCTG CAGGAGAAGC TGGCAGGAGC CCAGCGCCAG CTGGGGCAGC
1501TCCGGGCTCA GGAAGCCGGC CTGCAGCAGG AGCAGAGGAA GGCAGACACC CACAAGAAGA
1561TGACTGAGTT CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1621ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTTG GCTTTATATA TCTTGTGGAA
1681AGGACGATGA TTCCGGCCTC AATAGGTTCT AACGCGTTAA GTCgacaatc aacctctgga
1741ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)