Construct: ORF TRCN0000475191

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009393.1_s317c1
Derived from:
ccsbBroadEn_12308
DNA Barcode:
CTTGTTGACGTACAAACAAGAGTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBQLN4 (56893)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475191
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56893 UBQLN4 ubiquilin 4 NM_001304342.2 10.6% 10.6% 1_1557del
2 human 56893 UBQLN4 ubiquilin 4 NM_020131.5 10.3% 10.3% 1_1617del
3 human 56893 UBQLN4 ubiquilin 4 XR_921895.3 5.6% 1_1413del;1600_3279del
4 mouse 94232 Ubqln4 ubiquilin 4 XM_006502396.2 10.2% 10.8% (many diffs)
5 mouse 94232 Ubqln4 ubiquilin 4 NM_033526.2 9.3% 9.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
212
ORF end:
398
ORF length:
186
Sequence:
1TATGCGATGG AGTTTCCCCA CACTGAGTGG GTGGAGACTG AAGTTAGGCC AGCTTGGCAC
61TTGATGTAAT TCTCCTTGGA ATTTGCCCTT TTTGAGTTTG GATCTTGGTT CATTCTCAAG
121CCTCAGACAG TGGTTCAAAG TTTTTTTCTT CCATTTCAGG TGTCGTGAGG CTAGCATCGA
181TTGATCAACA AGTTTGTACA AAAAAGTTGG CATGATCCAG CTTTTGGCTG GAAGTGGAAA
241CTCACAGGTG CAGACGCCAG AAGTGAGATT TCAGCAGCAG CTGGAGCAGC TCAACTCCAT
301GGGCTTCATC AATCGTGAGG CTAACCTGCA GGCCCTGATT GCCACAGGAG GGGACATCAA
361CGCAGCTATC GAGAGACTGC TGGGCTCCCA GCTCTCCTAC CCAACTTTCT TGTACAAAGT
421GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG
481AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA
541CGACTTGTTG ACGTACAAAC AAGAGTAACG CGTTAAGTCg acaatcaacc tctggattac
601aaaatttgtg aaagatt

Download FASTA (ORF) (Full)