Construct: ORF TRCN0000475195
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014624.1_s317c1
- Derived from:
- ccsbBroadEn_13540
- DNA Barcode:
- CATGGACAGCGTTGCGAAAAGGGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC141 (285025)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475195
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_017003871.1 | 83.6% | 82.8% | (many diffs) |
| 2 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_017003870.2 | 77.3% | 76.9% | (many diffs) |
| 3 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_017003869.2 | 59.2% | 58.7% | (many diffs) |
| 4 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_017003868.2 | 57.6% | 57.2% | (many diffs) |
| 5 | human | 285025 | CCDC141 | coiled-coil domain containi... | NM_173648.4 | 56.9% | 56.5% | (many diffs) |
| 6 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_011510993.3 | 56.7% | 55% | (many diffs) |
| 7 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_011510992.3 | 56.1% | 55.8% | (many diffs) |
| 8 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_011510991.3 | 55.9% | 55.7% | (many diffs) |
| 9 | human | 285025 | CCDC141 | coiled-coil domain containi... | XM_017003867.2 | 55.9% | 55.6% | (many diffs) |
| 10 | human | 285025 | CCDC141 | coiled-coil domain containi... | XR_001738715.2 | 25.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2694
- ORF length:
- 2625
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcagtttcag agcttaaaag aattttatga aaccgaaatc cctcagaagg 121 agcaggatga tgctaaagcc aagcattgtt ctgactcggc tgagaagcag tggcagctat 181 ttttaaagaa gagttttata acacaagatc tagggcttga gttccttaat ttaataaata 241 tggcaaaaga gaacgagata ttagatgtga aaaatgaagt gtacctcatg aagaacacca 301 tggaaaacca gaaagcagaa cgggaagaac ttagcctcct tcggctggca tggcagctta 361 aagccacgga aagcaagcct ggaaaacagc agtgggcggc attcaaagag caacttaaaa 421 agacttctca caacttaaaa cttcttcagg aagcacttat gcctgtgtct gcacttgacc 481 tcggagggag cctccagttc attttagatc tacgacaaaa atggaatgac atgaagcctc 541 agttccagca attgaatgat gaggttcagt acattatgaa agaatcagag gagttaactg 601 gcagaggagc ccctgtaaaa gaaaagtctc aacaactgaa ggaccttatt cacttccatc 661 aaaaacagaa agagagaatc caggattacg aggatatcct gtacaaggtg gtccagttcc 721 atcaagtcaa ggaagagctg ggacgtctca tcaaatcaag agagctggag tttgtagagc 781 agccgaagga actgggtgat gcccatgatg tgcagattca cctccggtgc tctcaggaaa 841 agcaagcccg tgtagaccat ctccacagac tggccctttc cttaggagtc gacatcatct 901 catcagtgca gcggcctcac tgctctaatg tttctgcaaa gaacctacag cagcagctgg 961 agctccttga ggaggacagc atgaagtggc gtgccaaagc tgaggagtat ggacggaccc 1021 tgtcccgtag tgtggagtac tgcgccatga gagacgagat aaatgagctc aaagactcat 1081 tcaaagatat caaaaagaaa ttcaataatt tgaagtttaa ttacactaag aaaaatgaaa 1141 aatctcggaa tctgaaggcg cttaaatatc aaattcagca agttgatatg tatgctgaaa 1201 aaatgcaggc tttgaaaagg aaaatggaaa aagttagtaa taaaacctct gattctttct 1261 taaattatcc aagtgataaa gttaatgtcc ttttggaagt catgaaggat ttgcaaaaac 1321 atgtggatga ctttgacaaa gttgtgacag attacaagaa gaatttggac ctgactgagc 1381 atttccagga ggtgatagaa gagtgtcatt tttggtacga agatgcaagt gccacagttg 1441 taagagttgg aaaatattcc acagagtgca agacaaagga agctgtgaaa attctccacc 1501 agcagtttaa taagtttatt gcaccctcag tgccgcagca agaagaaagg attcaggagg 1561 ccactgacct tgctcagcac ttatatggtt tggaagaagg acagaaatat attgagaaaa 1621 tagtgacaaa acacaaagag gttcttgaat ctgtgactga attatgtgag tccctcacag 1681 agctcgaaga aaaactgaag cagggagatg ttttaaagat gaatccgaat ttggaagact 1741 tccattatga ttacattgac ttgctaaagg aaccagcaaa aaataagcag acaatattca 1801 atgaagaaag gaataagggg caggtgcagg tggcagatct tttgggcatc aatggaacag 1861 gggaagagcg actaccacaa gacctgaagg tgtccactga caaggagggt ggcgtccagg 1921 acctgctcct gcctgaagac atgctctcag gggaagaata tgagtgtgtc tcacctgatg 1981 acatctcctt gcctcctctc ccaggaagcc ctgagtcccc ccttgcacca tctgacatgg 2041 aggtggaaga gcctgtcagc tcctccctca gccttcacat aagcagctat ggggtgcagg 2101 ctgggaccag cagcccaggg gatgcccagg aatctgttct tccaccacct gttgcctttg 2161 cggatgcatg caatgataag agagaaacat tttcaagtca ttttgagagg ccttacctcc 2221 agttcaaagc tgagccccca ctaaccTCCA GAGGATTCGT GGAAAAGAGT ACTGCCTTAC 2281 ACAGAATCAG TGCTGAACAT CCAGAGAGCA TGATGAGTGA AGTGCATGAG AGAGCTTTAC 2341 AGCAGCACCC TCAGGCTCAG GGTGGTTTGC TAGAAACACG GGAGAAAATG CATGCTGATA 2401 ATAACTTCAC TAAAACCCAA GATAGGCTGC ATGCTTCCTC TGATGCATTC TCGGGCCTCA 2461 GGTTTCAATC AGGCACCAGC AGGGGCTATC AGAGGCAAAT GGTTCCTCGA GAAGAGATTA 2521 AAAGCACATC AGCAAAGAGC AGCGTGGTCA GCCTAGCTGA CCAGGCACCT AATTTCTCCA 2581 GGCTCCTGTC TAATGTAACT GTCATGGAAG GTTCTCCAGT GACTTTGGAA GTTGAAGTAA 2641 CAGGATTTCC AGAGCCTACA CTGACATGGT GGGTAGCCTA TAATGACAAG CCATTGCCAA 2701 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 2761 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 2821 TATCTTGTGG AAAGGACGAC ATGGACAGCG TTGCGAAAAG GGGACGCGTT AAGTCgacaa 2881 tcaacctctg gattacaaaa tttgtgaaag att