Construct: ORF TRCN0000475338

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006705.1_s317c1
Derived from:
ccsbBroadEn_12598
DNA Barcode:
TCAATCGACACTCCCTTCGATTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GTDC1 (79712)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475338
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79712 GTDC1 glycosyltransferase like do... NM_001284235.1 100% 100%
2 human 79712 GTDC1 glycosyltransferase like do... NM_001354356.1 100% 100%
3 human 79712 GTDC1 glycosyltransferase like do... NM_001354358.1 100% 100%
4 human 79712 GTDC1 glycosyltransferase like do... NM_024659.5 78.2% 78.2% 877_1119del
5 human 79712 GTDC1 glycosyltransferase like do... XM_017004944.1 78.2% 78.2% 877_1119del
6 human 79712 GTDC1 glycosyltransferase like do... XM_017004945.1 78.2% 78.2% 877_1119del
7 human 79712 GTDC1 glycosyltransferase like do... XM_017004946.1 78.2% 78.2% 877_1119del
8 human 79712 GTDC1 glycosyltransferase like do... XM_017004947.1 78.2% 78.2% 877_1119del
9 human 79712 GTDC1 glycosyltransferase like do... XM_017004948.1 78.2% 78.2% 877_1119del
10 human 79712 GTDC1 glycosyltransferase like do... NM_001284233.2 77.6% 77.6% 877_1128del
11 human 79712 GTDC1 glycosyltransferase like do... NM_001354360.1 77.6% 77.6% 877_1128del
12 human 79712 GTDC1 glycosyltransferase like do... XM_017004942.1 77.6% 77.6% 877_1128del
13 human 79712 GTDC1 glycosyltransferase like do... XM_017004943.1 77.6% 77.6% 877_1128del
14 human 79712 GTDC1 glycosyltransferase like do... XM_017004941.1 76.4% 76.4% 1_27del;904_1146del
15 human 79712 GTDC1 glycosyltransferase like do... XM_017004940.2 75.8% 75.8% 1_27del;904_1155del
16 human 79712 GTDC1 glycosyltransferase like do... NM_001354353.1 72.4% 65.2% (many diffs)
17 human 79712 GTDC1 glycosyltransferase like do... XM_017004957.2 72.2% 59.3% (many diffs)
18 human 79712 GTDC1 glycosyltransferase like do... XM_017004956.2 70.2% 57.6% (many diffs)
19 human 79712 GTDC1 glycosyltransferase like do... XM_017004939.2 68.7% 68.7% 520_666del;1024_1275del
20 human 79712 GTDC1 glycosyltransferase like do... NM_001354352.1 68% 55.1% (many diffs)
21 human 79712 GTDC1 glycosyltransferase like do... NM_001354362.1 68% 55.1% (many diffs)
22 human 79712 GTDC1 glycosyltransferase like do... XM_017004950.2 68% 55.1% (many diffs)
23 human 79712 GTDC1 glycosyltransferase like do... XM_017004951.2 68% 55.1% (many diffs)
24 human 79712 GTDC1 glycosyltransferase like do... XM_017004954.2 68% 55.1% (many diffs)
25 human 79712 GTDC1 glycosyltransferase like do... XM_024453149.1 68% 55.1% (many diffs)
26 human 79712 GTDC1 glycosyltransferase like do... XM_017004938.1 67.7% 67.7% 1_27del;547_693del;1051_1293del
27 human 79712 GTDC1 glycosyltransferase like do... XM_017004937.2 67.2% 67.2% 1_27del;547_693del;1051_1302del
28 human 79712 GTDC1 glycosyltransferase like do... XM_017004949.2 66.3% 53.8% (many diffs)
29 human 79712 GTDC1 glycosyltransferase like do... NM_001006636.5 63.7% 63.7% 877_1374del
30 human 79712 GTDC1 glycosyltransferase like do... NM_001164629.4 63.7% 63.7% 877_1374del
31 human 79712 GTDC1 glycosyltransferase like do... NM_001354354.1 63.7% 63.7% 877_1374del
32 human 79712 GTDC1 glycosyltransferase like do... NM_001354361.1 63.7% 63.7% 877_1374del
33 human 79712 GTDC1 glycosyltransferase like do... XM_017004928.2 63.7% 63.7% 877_1374del
34 human 79712 GTDC1 glycosyltransferase like do... XM_017004929.2 63.7% 63.7% 877_1374del
35 human 79712 GTDC1 glycosyltransferase like do... XM_017004930.2 63.7% 63.7% 877_1374del
36 human 79712 GTDC1 glycosyltransferase like do... XM_017004934.2 63.7% 63.7% 877_1374del
37 human 79712 GTDC1 glycosyltransferase like do... XM_017004935.2 63.7% 63.7% 877_1374del
38 human 79712 GTDC1 glycosyltransferase like do... XM_017004936.2 63.7% 63.7% 877_1374del
39 human 79712 GTDC1 glycosyltransferase like do... XM_024453146.1 63.7% 63.7% 877_1374del
40 human 79712 GTDC1 glycosyltransferase like do... XM_017004926.2 62.5% 62.5% 1_27del;904_1401del
41 human 79712 GTDC1 glycosyltransferase like do... XM_005263774.3 57.5% 57.5% 520_666del;1024_1521del
42 human 79712 GTDC1 glycosyltransferase like do... XM_005263784.3 57.5% 57.5% 520_666del;1024_1521del
43 human 79712 GTDC1 glycosyltransferase like do... XM_011511843.3 57.5% 57.5% 520_666del;1024_1521del
44 human 79712 GTDC1 glycosyltransferase like do... XM_011511855.3 57.5% 57.5% 520_666del;1024_1521del
45 human 79712 GTDC1 glycosyltransferase like do... XM_017004918.2 57.5% 57.5% 520_666del;1024_1521del
46 human 79712 GTDC1 glycosyltransferase like do... XM_017004920.2 57.5% 57.5% 520_666del;1024_1521del
47 human 79712 GTDC1 glycosyltransferase like do... XM_017004921.2 57.5% 57.5% 520_666del;1024_1521del
48 human 79712 GTDC1 glycosyltransferase like do... XM_017004922.2 57.5% 57.5% 520_666del;1024_1521del
49 human 79712 GTDC1 glycosyltransferase like do... XM_017004923.2 57.5% 57.5% 520_666del;1024_1521del
50 human 79712 GTDC1 glycosyltransferase like do... XM_024453142.1 57.5% 57.5% 520_666del;1024_1521del
51 human 79712 GTDC1 glycosyltransferase like do... XM_024453143.1 57.5% 57.5% 520_666del;1024_1521del
52 human 79712 GTDC1 glycosyltransferase like do... XM_024453141.1 56.5% 56.5% 1_27del;547_693del;1051_1548del
53 human 79712 GTDC1 glycosyltransferase like do... NM_001284238.2 54.9% 51.4% (many diffs)
54 human 79712 GTDC1 glycosyltransferase like do... XM_024453147.1 54.9% 51.4% (many diffs)
55 human 79712 GTDC1 glycosyltransferase like do... XM_024453148.1 54.9% 51.4% (many diffs)
56 human 79712 GTDC1 glycosyltransferase like do... XM_011511856.3 49.6% 46.4% (many diffs)
57 human 79712 GTDC1 glycosyltransferase like do... XM_017004925.2 49.6% 46.4% (many diffs)
58 human 79712 GTDC1 glycosyltransferase like do... XM_024453144.1 49.6% 46.4% (many diffs)
59 human 79712 GTDC1 glycosyltransferase like do... XM_024453145.1 49.6% 46.4% (many diffs)
60 human 79712 GTDC1 glycosyltransferase like do... NM_001284234.2 35.5% 35.5% 0_1ins387;490_987del
61 human 79712 GTDC1 glycosyltransferase like do... NM_001354351.1 35.5% 35.5% 0_1ins387;490_987del
62 human 79712 GTDC1 glycosyltransferase like do... NR_148872.1 34.4% 1_233del;1109_2538delinsG
63 human 79712 GTDC1 glycosyltransferase like do... NM_001354350.1 29.9% 26.6% (many diffs)
64 human 79712 GTDC1 glycosyltransferase like do... NM_001354355.1 29.9% 26.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
942
ORF length:
876
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tatcctcatc attgaagcat tctatggagg ctcccataaa cagctggtgg
121atcttcttca agaagagtta ggagactgtg tcgtttatac ccttcctgca aagaaatggc
181attggagagc ccggacatct gctttatatt tctctcagac cattcccatc agtgagcatt
241acaggaccct ctttgcaagt tcagtgctta acctgaccga actggctgcc cttcggcctg
301accttgggaa actgaaaaag attctgtatt ttcacgagaa ccagttgata tatcctgtca
361agaaatgtca ggagagggat ttccaatatg gatacaacca aattctttca tgcctggtgg
421ctgatgtggt tgtattcaac tcagttttta atatggaatc atttctcact tccatgggaa
481aatttatgaa gctgattcct gatcacagac ccaaggatct ggaaagcatc atcagaccca
541agtgccaagt tatttacttt cccatcaggt ttcctgatgt gagcagattc atgcccaagc
601acaaaacaac ccatttaaag aagatgctcg gCCTTAAAGG AAATGGCGGT GCGGTTCTGT
661CCATGGCCCT TCCTTTTCAG CCAGAGCAGA GAGATTCAGA GGATTTATTG AAGAATTTTA
721ATTCAGAGTG TGATACACAC TGTGGCCTTG ATACTGCACG ACAAGAATAT TTGGGTAACT
781CATTAAGACA GGAATCAGAC TTGAAAAAAT CCACCTCGTC AGATAATTCA AGCTCTCATC
841ATGGTGAAAA TAAACAAAAT CTGACTGTTG ATCCCTGTGA CATTTTGGGT GGAGTTGATA
901ATCAGCAAAG ACTGCTACAC ATTGTCTGGC CTCACAGGTG GTACCCAACT TTCTTGTACA
961AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1021AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
1081AGGACGATCA ATCGACACTC CCTTCGATTC CACGCGTTAA GTCgacaatc aacctctgga
1141ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)