Construct: ORF TRCN0000475344

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016772.1_s317c1
Derived from:
ccsbBroadEn_04926
DNA Barcode:
TGCACTATGAACCCCTACCACCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
APOOL (139322)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475344
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 139322 APOOL apolipoprotein O like NM_198450.6 100% 100%
2 human 139322 APOOL apolipoprotein O like XM_017029272.1 98.8% 98.8% 718_726delGGTTTGTTG
3 human 139322 APOOL apolipoprotein O like XM_011530859.2 97.6% 96.3% (many diffs)
4 human 139322 APOOL apolipoprotein O like XM_017029271.1 96.6% 95.2% (many diffs)
5 human 139322 APOOL apolipoprotein O like XM_017029273.1 76% 76% 0_1ins186;532_540delGGTTTGTTG
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
873
ORF length:
804
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggccatc aggatgggaa aactgacaac catgcctgca ggtctgatat
121atgcatctgt aagtgtacat gcagccaaac aagaggaatc caaaaagcag ctagtgaaac
181cagagcagct ccccatatat actgcaccac cgctccagtc taaatatgtt gaagagcagc
241ctggtcattt acaaatgggc tttgcttcca tccgcactgc aactggttgt tacattggct
301ggtgcaaggg tgtttatgtc tttgtgaaaa atgggataat ggatacagta caatttggaa
361aagatgctta tgtctatctg aagaatcctc ctcgagattt tcttccgaaa atgggagtta
421ttacagtttc aggattggcg ggcttggttt cagcgagaaa aggttccaag tttaagaaaa
481ttacttatcc tctgggactg gccactttag gagcaactgt ttgctaccca gttcagtccg
541taataattgc TAAGGTAACA GCAAAAAAGG TATATGCTAC AAGCCAGCAA ATTTTTGGAG
601CAGTTAAATC ATTGTGGACA AAAAGCAGCA AAGAAGAGTC ACTCCCTAAA CCTAAAGAAA
661AAACTAAGCT AGGATCCTCT TCCGAAATAG AAGTACCTGC AAAAACAACT CACGTCTTGA
721AACACTCAGT GCCCTTGCCA ACAGAACTCA GCTCTGAAGC AAAGACCAAA TCAGAATCCA
781CTTCAGGTGC AACCCAGTTT ATGCCTGACC CCAAGCTCAT GGATCACGGG CAGTCCCACC
841CAGAAGATAT AGATATGTAC AGCACTAGAA GCTTGCCAAC TTTCTTGTAC AAAGTGGTTG
901ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
961GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATG
1021CACTATGAAC CCCTACCACC TTACGCGTTA AGTCgacaat caacctctgg attacaaaat
1081ttgtgaaaga tt

Download FASTA (ORF) (Full)