Construct: ORF TRCN0000475413

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010823.1_s317c1
Derived from:
ccsbBroadEn_13190
DNA Barcode:
GCATTCACTCATAAAGGCCACCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC26 (137196)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475413
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130918.1 21.8% 1_200del;410G>A;528_1495del
2 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130919.1 19.7% 1_354del;564G>A;682_1649del
3 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130920.1 19.5% 1_371del;581G>A;699_1666del
4 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130917.1 18.9% 1_423del;633G>A;751_1718del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
393
ORF length:
327
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttG TACAAAAAAG
61TTGGCATGGA AAGATTGTGC CTGCAGCCTG GCCTGTTGCC CACAGCGGTC TACCTGCCAC
121ACTGGGAAAG ATCGAGCAGA GACAGAGAAG AAAAGGAGGC TCCATTTTTC AGGCTGCTCT
181CCCGCAGGCT CATGTTTTGT GTTCATGCCA GGCAGAGAAC ACAAAATGTT CCAATAAATA
241AGTATCAAAG GTTAGTGGTG AAAATGAAGG AGGAAGAGGC ATTGCGTGAA AAACTAAACA
301TGCAAAATAT TACACACAAA GAGAACCAAA ATGCAGGTTC ACTGGAAATG ATAGACAATA
361TGTTAAAACA AGAGGAGAGA AGAGAGCTGA AATACCCAAC TTTCTTGTAC AAAGTGGTTG
421ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
481GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGC
541ATTCACTCAT AAAGGCCACC CTACGCGTTA AGTCgacaat caacctctgg attacaaaat
601ttgtgaaaga tt

Download FASTA (ORF) (Full)