Construct: ORF TRCN0000475544
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018081.1_s317c1
- Derived from:
- ccsbBroadEn_02147
- DNA Barcode:
- AAACATCCATCCACGTGAAGCTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC9A3R2 (9351)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475544
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | NM_001130012.3 | 100% | 100% | |
| 2 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | NM_004785.6 | 96.7% | 96.7% | 853_854ins33 |
| 3 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | XM_017023895.2 | 81.6% | 80.7% | (many diffs) |
| 4 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | XM_017023894.1 | 68.2% | 52% | (many diffs) |
| 5 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | NM_001252073.2 | 64.7% | 61% | (many diffs) |
| 6 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | NM_001252075.2 | 64.3% | 61.3% | (many diffs) |
| 7 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | NM_001252076.2 | 61.5% | 57.8% | (many diffs) |
| 8 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | XM_006720981.1 | 59.6% | 59% | 1_2delATins406;5C>A;7_8insA |
| 9 | human | 9351 | SLC9A3R2 | SLC9A3 regulator 2 | XM_024450492.1 | 56.3% | 55.7% | (many diffs) |
| 10 | mouse | 65962 | Slc9a3r2 | solute carrier family 9 (so... | NM_023055.2 | 87.6% | 91.6% | (many diffs) |
| 11 | mouse | 65962 | Slc9a3r2 | solute carrier family 9 (so... | NM_001357796.1 | 82% | 86.3% | (many diffs) |
| 12 | mouse | 65962 | Slc9a3r2 | solute carrier family 9 (so... | NM_023449.3 | 57.9% | 56.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1077
- ORF length:
- 1011
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc cgcgccggag ccgctgcggc cgcgcctgtg ccgcttggtg cgcggagagc 121 agggctacgg cttccacctg cacggcgaga agggccgccg cgggcagttc atccggcgcg 181 tggaacccgg ttcccccgcc gaggccgccg cgctgcgcgc tggggaccgc ctggtcgagg 241 tcaacggcgt caacgtggag ggcgagacgc accaccaggt ggtgcaaagg atcaaggctg 301 tggaggggca gactcggctg ctggtggtgg accaggagac agatgaggag ctccgccggc 361 ggcagctgac ctgtaccgag gagatggccc agcgagggct cccacccgcc cacgacccct 421 gggagccgaa gccagactgg gcacacaccg gcagccacag ctccgaagct ggcaagaagg 481 atgtcagtgg gcccctgagg gagctgcgcc ctcggctctg ccacctgcga aagggacctc 541 agggctatgg gttcaacctg catagtgaca agtcccggcc cggccagtac atccgctctg 601 tggacccggg ctcacctgcc gcccgctctg gcctccgcgc ccaggaccgg ctcattgagg 661 tgaacgggca gaatgtggag ggactgcgcc atgctgaggt ggtggccagc atcaaggcac 721 gggaggacga ggcccggctg ctggtcgtgg accccgagac agatgaacac ttcaagcggc 781 ttcgggtcac acccaccgag gagcacgtgg aaggtcctct gccgtcaccc gtcaccaatg 841 gaaccagccc tgcccagctc aatggtggct ctgcgtgctc gtcccgaagt gacctgcctg 901 gttccgacaa ggacactgag gatggcagtg cctggaagca agaTCCCTTC CAGGAGAGCG 961 GCCTCCACCT GAGCCCCACG GCGGCCGAGG CCAAGGAGAA GGCTCGAGCC ATGCGAGTCA 1021 ACAAGCGCGC GCCACAGATG GACTGGAACA GGAAGCGTGA AATCTTCAGC AACTTCTGCC 1081 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 1141 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 1201 ATATATCTTG TGGAAAGGAC GAAAACATCC ATCCACGTGA AGCTGTACGC GTTAAGTCga 1261 caatcaacct ctggattaca aaatttgtga aagatt