Construct: ORF TRCN0000475642

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001661.1_s317c1
Derived from:
ccsbBroadEn_13872
DNA Barcode:
CCGTTCTATAATTCCGAATGATCA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
HNRNPH2 (3188)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475642
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3188 HNRNPH2 heterogeneous nuclear ribon... NM_001032393.2 99.8% 48.1% 639delG;969C>G
2 human 3188 HNRNPH2 heterogeneous nuclear ribon... NM_019597.5 99.8% 48.1% 639delG;969C>G
3 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001257293.2 87.6% 46.3% (many diffs)
4 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364233.1 87.6% 46.3% (many diffs)
5 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364234.1 87.6% 46.3% (many diffs)
6 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364235.1 87.6% 46.3% (many diffs)
7 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364236.2 87.6% 46.3% (many diffs)
8 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364237.2 87.6% 46.3% (many diffs)
9 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364238.2 87.6% 46.3% (many diffs)
10 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364239.2 87.6% 46.3% (many diffs)
11 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_005520.3 87.6% 46.3% (many diffs)
12 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364231.2 87.1% 46% (many diffs)
13 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364241.2 86% 47% (many diffs)
14 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364242.2 86% 47% (many diffs)
15 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364243.2 86% 47% (many diffs)
16 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364244.2 85.5% 47.3% (many diffs)
17 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364246.2 83.8% 48.4% (many diffs)
18 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364247.2 83.8% 48.4% (many diffs)
19 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001363572.2 83.5% 48.4% (many diffs)
20 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364245.2 83.5% 48.4% (many diffs)
21 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364225.1 82.5% 44% (many diffs)
22 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364226.1 82.5% 44% (many diffs)
23 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364227.2 82.5% 44% (many diffs)
24 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364228.2 82.5% 44% (many diffs)
25 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364229.2 82.5% 44% (many diffs)
26 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364248.2 81.9% 49.2% (many diffs)
27 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364230.2 78.6% 46% (many diffs)
28 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364232.2 78.6% 46% (many diffs)
29 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364250.2 77.8% 35.4% (many diffs)
30 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364240.2 77.1% 46.7% (many diffs)
31 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364254.2 48.7% 13.9% (many diffs)
32 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364255.2 48.7% 13.9% (many diffs)
33 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364251.2 45.6% 13% (many diffs)
34 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364252.2 45.6% 13% (many diffs)
35 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364253.1 45.6% 13% (many diffs)
36 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_001313716.1 93.6% 47.2% (many diffs)
37 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_001313717.1 93.6% 47.2% (many diffs)
38 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_019868.4 93.6% 47.2% (many diffs)
39 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... NM_021510.2 87.7% 46.1% (many diffs)
40 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314690.1 87.7% 46.1% (many diffs)
41 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314691.1 87.7% 46.1% (many diffs)
42 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314692.1 86.2% 46.8% (many diffs)
43 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314693.1 86.2% 46.8% (many diffs)
44 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533881.2 85.6% 47.1% (many diffs)
45 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533883.2 83.6% 48.2% (many diffs)
46 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... NM_001347487.1 82.4% 43.8% (many diffs)
47 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533876.3 82.4% 43.8% (many diffs)
48 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533877.3 82.4% 43.8% (many diffs)
49 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314694.1 82.1% 49% (many diffs)
50 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533878.1 81% 44.5% (many diffs)
51 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533879.1 80.4% 44.8% (many diffs)
52 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533880.2 78.5% 45.7% (many diffs)
53 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314696.1 48.7% 13.9% (many diffs)
54 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314697.1 47.2% 14.1% (many diffs)
55 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533884.2 45.5% 13% (many diffs)
56 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314695.1 45.5% 13% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
759
ORF length:
690
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gatgctgagc acggaaggca gggaggggtt cgtggtgaag gtcaggggcc
121taccctggtc ctgctcagcc gatgaagtga tgcgcttctt ctctgattgc aagatccaaa
181atggcacatc aggtattcgt ttcatctaca ccagagaagg cagaccaagt ggtgaagcat
241ttgttgaact tgaatctgaa gaggaagtga aattggcttt gaagaaggac agagaaacca
301tgggacacag atacgttgaa gtattcaagt ctaacagtgt tgaaatggat tgggtgttga
361agcatacagg tccgaatagc cctgatactg ccaacgatgg cttcgtccgg cttagaggac
421tcccatttgg ctgtagcaag gaagagattg ttcagttctt ttcagggttg gaaattgtgc
481caaatgggat gacactgcca gtggactttc aggggcgaag cacaggggaa gcctttgtgc
541agtttgcttc acaggagata gctgagaagg ccttaaagaa acacaaggaa agaatagggc
601acaggtacat tgagatcttc aagagtagcc gagctgaagt tcgaacccac tatgatcccc
661ctcgaaagct catggctatg cagcggccag gtccctatga taggccgggg ctggcagagg
721gtataatagc attggcagag gagctgggtt tgaaaggatg aggcgtggtg cctatggtgg
781agggtatgga ggctatgatg actatggtgg ctataatgat ggatatggct ttgggtctga
841tagatttgga agagacctca attactgttt ttcaggaatg tctgatcata gatacggaga
901tggtgggtcc agtttccaga gcaccacagg gcactgtgta cacatgaggg ggttacctta
961cagagccact gagaatgata tttataattt cttctcacct cttaatccca tgagagtaca
1021tattgaaatt ggaccggatg gcagagttac cggtgaggca gatgttgaat tTGCTACTCA
1081TGAAGATGCT GTGGCAGCTA TGGCAAAAGA CAAAGCTAAT ATGCAACACA GATATGTGGA
1141GCTCTTCTTA AATTCTACTG CAGGAACAAG TGGGGGTGCT TACGATCACA GCTATGTAGA
1201ACTTTTTTTG AATTCTACAG CAGGGGCAAG TGGTGGCGCT TATGGTAGCC AAATGATGGG
1261AGGGATGGGC TTATCCAACC AGTCTAGTTA TGGAGGTCCT GCTAGCCAGC AGCTGAGTGG
1321TGGTTATGGA GGTGGTTATG GTGGTCAGAG CAGTATGAGT GGATATGACC AAGTTCTGCA
1381GGAAAACTCC AGTGACTATC AGTCAAACCT TGCTTTGCCA ACTTTCTTGT ACAAAGTGGT
1441TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC
1501TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA
1561CCGTTCTATA ATTCCGAATG ATCAACGCGT TAAGTCgaca atcaacctct ggattacaaa
1621atttgtgaaa gatt

Download FASTA (ORF) (Full)