Construct: ORF TRCN0000475720

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014232.1_s317c1
Derived from:
ccsbBroadEn_09148
DNA Barcode:
CCCACTGAACTATGACGCACAATG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
USP44 (84101)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475720
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84101 USP44 ubiquitin specific peptidas... NM_001042403.3 99.8% 99.8% 271A>G;870G>A;1989T>C
2 human 84101 USP44 ubiquitin specific peptidas... NM_001278393.2 99.8% 99.8% 271A>G;870G>A;1989T>C
3 human 84101 USP44 ubiquitin specific peptidas... NM_001347936.2 99.8% 99.8% 271A>G;870G>A;1989T>C
4 human 84101 USP44 ubiquitin specific peptidas... NM_001347937.2 99.8% 99.8% 271A>G;870G>A;1989T>C
5 human 84101 USP44 ubiquitin specific peptidas... NM_032147.5 99.8% 99.8% 271A>G;870G>A;1989T>C
6 human 84101 USP44 ubiquitin specific peptidas... XM_017020010.2 99.8% 99.8% 271A>G;870G>A;1989T>C
7 human 84101 USP44 ubiquitin specific peptidas... XM_005269172.1 95.6% 95.5% (many diffs)
8 human 84101 USP44 ubiquitin specific peptidas... XM_005269173.1 95.6% 95.5% (many diffs)
9 human 84101 USP44 ubiquitin specific peptidas... XM_005269174.1 95.6% 95.5% (many diffs)
10 human 84101 USP44 ubiquitin specific peptidas... XM_011538800.2 95.6% 95.5% (many diffs)
11 human 84101 USP44 ubiquitin specific peptidas... XM_011538801.1 95.6% 95.5% (many diffs)
12 human 84101 USP44 ubiquitin specific peptidas... XM_011538802.1 95.6% 95.5% (many diffs)
13 human 84101 USP44 ubiquitin specific peptidas... XM_011538803.1 95.6% 95.5% (many diffs)
14 human 84101 USP44 ubiquitin specific peptidas... XM_011538804.2 95.6% 95.5% (many diffs)
15 human 84101 USP44 ubiquitin specific peptidas... XM_011538805.2 95.6% 95.5% (many diffs)
16 human 84101 USP44 ubiquitin specific peptidas... XM_017020012.1 78.6% 76.1% (many diffs)
17 human 84101 USP44 ubiquitin specific peptidas... XR_001748887.1 77.3% (many diffs)
18 human 84101 USP44 ubiquitin specific peptidas... XR_944757.1 77% (many diffs)
19 human 84101 USP44 ubiquitin specific peptidas... XM_011538806.2 69.7% 68.2% (many diffs)
20 human 84101 USP44 ubiquitin specific peptidas... NR_144945.2 52.7% (many diffs)
21 human 84101 USP44 ubiquitin specific peptidas... NR_144946.2 51.6% (many diffs)
22 human 84101 USP44 ubiquitin specific peptidas... NR_125360.3 49.8% (many diffs)
23 human 84101 USP44 ubiquitin specific peptidas... NR_144948.2 49.6% (many diffs)
24 human 84101 USP44 ubiquitin specific peptidas... NR_144947.2 47.6% (many diffs)
25 human 84101 USP44 ubiquitin specific peptidas... NR_144944.2 47.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2202
ORF length:
2136
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct agcaatggat acgtgcaaac atgttgggca gctgcagctt gctcaagacc
121attccagcct caaccctcag aaatggcact gtgtggactg caacacgacc gagtccattt
181gggcttgcct tagctgctcc catgttgcct gtggaagata tattgaagag catgcactca
241agcactttca agaaagcagt catcctgttg cattggaggt gaatgagatg tacgtttttt
301gttacctttg tgatgattat gttctgaatg ataacgcaac tggagacctg aagttactac
361gacgtacatt aagtgccatc aaaagtcaaa attatcactg cacaactcgt agtgggaggt
421ttttacggtc catgggtaca ggtgatgatt cttatttctt acatgacggt gcccaatctc
481tgcttcaaag tgaagatcaa ctgtatactg ctctttggca caggagaagg atactaatgg
541gtaaaatctt tcgaacatgg tttgaacaat cacccattgg aagaaaaaag caagaagaac
601catttcagga aaaaatagta gtaaaaagag aagtaaagaa aagacggcag gaattggagt
661atcaagttaa agcagaattg gaaagtatgc ctccaagaaa gagtttacgt ttacaagggc
721tcgctcagtc gaccataata gaaatagttt ctgttcaggt gccagcacaa acgccagcat
781caccagcaaa agataaagta ctctctacct cagaaaatga aatatctcaa aaagtcagtg
841actcctcagt taaacgaagg ccaatagtaa ctcctggtgt aacaggattg agaaatttgg
901gaaatacttg ctatatgaat tctgttcttc aggtattgag tcatttactt atttttcgac
961aatgtttttt aaagcttgat ctgaaccaat ggctggctat gactgctagc gagaagacaa
1021gatcttgtaa gcatccacca gtcacagata cagtagtata tcaaatgaat gaatgtcagg
1081aaaaagatac aggttttgtt tgctccagac aatcaagtct gtcatcagga ctaagtggtg
1141gagcatcaaa aggtagaaag atggaactta ttcagccaaa ggagccaact tcacagtaca
1201tttctctttg tcatgaattg catactttgt tccaagtcat gtggtctgga aagtgggcgt
1261tggtctcacc atttgctatg ctacactcag tgtggagact cattcctgcc tttcgtggtt
1321acgcccaaca agacgctcag gaatttcttt gtgaactttt agataaaata caacgtgaat
1381tagagacaac tggtaccagt ttaccagctc ttatccccac ttctcaaagg aaactcatca
1441aacaagttct gaatgttgta aataacattt ttcatggaca acttcttagt caggttacat
1501gtcttgcatg tgacaacaaa tcaaatacca tagaaccttt ctgggacttg tcattggagt
1561ttccagaaag gtatcaatgc agtggaaaag atattgcttc ccagccatgt ctggttactg
1621aaatgttggc caaatttaca gaaactgaag ctttagaagg aaaaatctac gtatgtgacc
1681agtgtaactc aaagcgtaga aggttttcct ccaaaccagt tgtactcaca gaagcccaga
1741aacaacttat gatatgccac ctacctcagg ttctcagact gcacctcaaa cgattcaggt
1801ggtcaggacg taataaccga gagaagattg gtgttcatgt tggctttgag gaaatcttaa
1861acatggagcc ctattgctgc agggagaccc tgaaatcccT CAGACCAGAA TGCTTTATCT
1921ATGACTTGTC CGCGGTGGTG ATGCACCATG GGAAAGGATT TGGCTCAGGG CACTACACTG
1981CCTACTGCTA TAATTCTGAA GGAGGGTTCT GGGTACACTG CAATGATTCC AAACTAAGCA
2041TGTGCACTAT GGACGAAGTA TGCAAGGCTC AAGCTTATAT CTTGTTTTAT ACCCAACGAG
2101TTACTGAGAA TGGACATTCT AAACTTTTGC CTCCAGAGCT CCTGTTGGGG AGCCAACATC
2161CCAATGAAGA CGCTGATACC TCGTCTAATG AAATCCTTAG CTGCCCAACT TTCTTGTACA
2221AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2281AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2341AGGACGACCC ACTGAACTAT GACGCACAAT GACGCGTTAA GTCgacaatc aacctctgga
2401ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)