Construct: ORF TRCN0000475749

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005491.1_s317c1
Derived from:
ccsbBroadEn_10950
DNA Barcode:
GTTTCGTATCGCCGAATCCCTTGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LMX1B (4010)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475749
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4010 LMX1B LIM homeobox transcription ... NM_002316.4 94% 94.1% 1_69del;441A>G;726G>C
2 human 4010 LMX1B LIM homeobox transcription ... NM_001174147.2 92.3% 92.5% (many diffs)
3 human 4010 LMX1B LIM homeobox transcription ... NM_001174146.2 91.4% 91.6% (many diffs)
4 mouse 16917 Lmx1b LIM homeobox transcription ... NM_010725.2 93.5% 100% (many diffs)
5 mouse 16917 Lmx1b LIM homeobox transcription ... XM_006497746.3 85.2% 91.1% (many diffs)
6 mouse 16917 Lmx1b LIM homeobox transcription ... XM_006497747.3 67.1% 73% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1182
ORF length:
1116
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt ggacggcatc aagatggagg agcacgccct gcgccccggg cccgccactc
121tgggggtgct gctgggctcc gactgcccgc atcccgccgt ctgcgagggc tgccagcggc
181ccatctccga ccgcttcctg atgcgagtca acgagtcgtc ctggcacgag gagtgtttgc
241agtgcgcggc gtgtcagcaa gccctcacca ccagctgcta cttccgggat cggaaactgt
301actgcaaaca agactaccaa cagctcttcg cggccaagtg cagcggctgc atggagaaga
361tcgcccccac cgagttcgtg atgcgggcgc tggagtgcgt gtaccacctg ggctgcttct
421gctgctgcgt gtgtgagcgg cagctacgca agggcgacga attcgtgctc aaggagggcc
481agctgctgtg caagggtgac tacgagaagg agaaggacct gctcagctcc gtgagccccg
541acgagtccga ctccgtgaag agcgaggatg aagatgggga catgaagccg gccaaggggc
601agggcagtca gagcaagggc agcggggatg acgggaagga cccgcggagg cccaagcgac
661cccggaccat cctcaccacg cagcagcgaa gagccttcaa ggcctccttc gaggtctcgt
721ccaagccttg ccgaaaggtc cgagagacac tggcagctga gacgggccTC AGTGTGCGCG
781TGGTCCAGGT CTGGTTTCAG AACCAAAGAG CAAAGATGAA GAAGCTGGCG CGGCGGCACC
841AGCAGCAGCA GGAGCAGCAG AACTCCCAGC GGCTGGGCCA GGAGGTCCTG TCCAGCCGCA
901TGGAGGGCAT GATGGCTTCC TACACGCCGC TGGCCCCACC ACAGCAGCAG ATCGTGGCCA
961TGGAACAGAG CCCCTACGGC AGCAGCGACC CCTTCCAGCA GGGCCTCACG CCGCCCCAAA
1021TGCCAGGGAA CGACTCCATC TTCCATGACA TCGACAGCGA TACCTCCTTA ACCAGCCTCA
1081GCGACTGCTT CCTCGGCTCC TCAGACGTGG GCTCCCTGCA GGCCCGCGTG GGGAACCCCA
1141TCGACCGGCT CTACTCCATG CAGAGTTCCT ACTTCGCCTC CTGCCCAACT TTCTTGTACA
1201AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1261AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
1321AGGACGAGTT TCGTATCGCC GAATCCCTTG TACGCGTTAA GTCgacaatc aacctctgga
1381ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)