Construct: ORF TRCN0000475813
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006875.1_s317c1
- Derived from:
- ccsbBroadEn_13731
- DNA Barcode:
- AGACGGTGGGCCTTGCGCCTGTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC37A5P (652972)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475813
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 652972 | LRRC37A5P | leucine rich repeat contain... | NR_034087.1 | 26.3% | (many diffs) | |
| 2 | human | 387646 | LRRC37A6P | leucine rich repeat contain... | NR_003525.2 | 3.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 387
- ORF length:
- 294
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGCTGCA GTACTTGCTT ATAGATTGGA 121 TTGTAGGTGA CCAGTTTGAA ATTCAGCTAA ACCAGCAGCT ATGGTCCCTC ATCCCCAACA 181 ACAATGTGAG AAGGCTTGTT TCTCATGTTA TCCGGACCTT GAAGACGGAC TGCACTGAGA 241 CCCATTTGCA ACTGGCCTGT GCCAAGCTCA TCTCTAGGAC AGGCCTCCTA ATGAAGCTTC 301 TCAGTGAGCA GCAAGAATTG AGAACTGTAT CAATGACAGC ATGGAAGCCC AGATTGAACA 361 GAAAGAGCAG AAGTCGAATG AGGTCCTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG 421 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 481 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAGACGGTG 541 GGCCTTGCGC CTGTGTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 601 aagatt