Construct: ORF TRCN0000475961
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002502.1_s317c1
- Derived from:
- ccsbBroadEn_10546
- DNA Barcode:
- TAATGTCTGTGACTGAACTTATTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C7orf13 (129790)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475961
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100506380 | LINC01006 | long intergenic non-protein... | NR_026865.2 | 7.8% | 1_758del;1023_3350del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 357
- ORF length:
- 264
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGTTTCC TCGCTGCACA GACCTGCTCG 121 GGAAGACTCG AGAAGGCCAC CCCAGGACTC CAGCTCTCCC CGGAAGGGCT TCCCCTCGGA 181 TTGCGTCTTG GCCCCTGGAA CCCTCCCTCT GTATCCTCTG CTGTTCCTCT CTTGGCCTCC 241 ATTTGGGTTG TGGCCTGGAT ACTCTGGCTC GCTGCTTCCC TTCTCTTAAG GATCACAGCC 301 CTGCACTGCC TGTCGTCCGG TGCCTGGAAA CCATTGTATT TTTTGGTCTG ATTTTGTTGC 361 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 421 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 481 ATATATCTTG TGGAAAGGAC GATAATGTCT GTGACTGAAC TTATTAACGC GTTAAGTCga 541 caatcaacct ctggattaca aaatttgtga aagatt