Construct: ORF TRCN0000476110
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002369.1_s317c1
- Derived from:
- ccsbBroadEn_07521
- DNA Barcode:
- ACGTCTTCCAATCCCTCTGCTCTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NR1I3 (9970)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476110
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077480.3 | 99.9% | 100% | 540C>T |
| 2 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_005122.5 | 98.7% | 98.8% | 540C>T;693_694insGTATCTCCCACA |
| 3 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077482.2 | 98.5% | 98.5% | 540C>T;823_837del |
| 4 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | XM_005245697.4 | 97.3% | 97.4% | 540C>T;693_694insGTATCTCCCACA;811_825del |
| 5 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077478.3 | 91.4% | 88% | (many diffs) |
| 6 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077479.3 | 90.3% | 87.9% | (many diffs) |
| 7 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077472.3 | 89% | 86.7% | (many diffs) |
| 8 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077469.3 | 89% | 85.7% | (many diffs) |
| 9 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077481.3 | 89% | 88% | (many diffs) |
| 10 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077471.3 | 87.6% | 87.7% | 540C>T;692_693ins129 |
| 11 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077477.3 | 81.9% | 76.3% | (many diffs) |
| 12 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077473.3 | 81.9% | 76.3% | (many diffs) |
| 13 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077476.3 | 80.8% | 75.2% | (many diffs) |
| 14 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077474.3 | 79.3% | 76% | (many diffs) |
| 15 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077470.3 | 79.2% | 76.9% | (many diffs) |
| 16 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | XM_005245694.5 | 77.6% | 75.4% | (many diffs) |
| 17 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | XM_005245693.4 | 76.8% | 74.5% | (many diffs) |
| 18 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | NM_001077475.3 | 71% | 65.5% | (many diffs) |
| 19 | human | 9970 | NR1I3 | nuclear receptor subfamily ... | XM_011510237.3 | 68.8% | 65.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1122
- ORF length:
- 1056
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc cagtagggaa gatgagctga ggaactgtgt ggtatgtggg gaccaagcca 121 caggctacca ctttaatgcg ctgacttgtg agggctgcaa gggtttcttc aggagaacag 181 tcagcaaaag cattggtccc acctgcccct ttgctggaag ctgtgaagtc agcaagactc 241 agaggcgcca ctgcccagcc tgcaggttgc agaagtgctt agatgctggc atgaggaaag 301 acatgatact gtcggcagaa gccctggcat tgcggcgagc aaagcaggcc cagcggcggg 361 cacagcaaac acctgtgcaa ctgagtaagg agcaagaaga gctgatccgg acactcctgg 421 gggcccacac ccgccacatg ggcaccatgt ttgaacagtt tgtgcagttt aggcctccag 481 ctcatctgtt catccatcac cagcccttgc ccaccctggc ccctgtgctg cctctggtca 541 cacacttcgc agacatcaac actttcatgg tactgcaagt catcaagttt actaaggacc 601 tgcctgtctt ccgttccctg cccattgaag accagatctc ccttctcaag ggagcagctg 661 tggaaatctg tcacatcgta ctcaatacca ctttctgtct ccaaacacaa aacttcctct 721 gcgggccTCT TCGCTACACA ATTGAAGATG GAGCCCGTGT ATCTCCCACA GTGGGGTTCC 781 AGGTAGAGTT TTTGGAGTTG CTCTTTCACT TCCATGGAAC ACTACGAAAA CTGCAGCTCC 841 AAGAGCCTGA GTATGTGCTC TTGGCTGCCA TGGCCCTCTT CTCTCCTGAC CGACCTGGAG 901 TTACCCAGAG AGATGAGATT GATCAGCTGC AAGAGGAGAT GGCACTGACT CTGCAAAGCT 961 ACATCAAGGG CCAGCAGCGA AGGCCCCGGG ATCGGTTTCT GTATGCGAAG TTGCTAGGCC 1021 TGCTGGCTGA GCTCCGGAGC ATTAATGAGG CCTACGGGTA CCAAATCCAG CACATCCAGG 1081 GCCTGTCTGC CATGATGCCG CTGCTCCAGG AGATCTGCAG CTGCCCAACT TTCTTGTACA 1141 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1201 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1261 AGGACGAACG TCTTCCAATC CCTCTGCTCT AACGCGTTAA GTCgacaatc aacctctgga 1321 ttacaaaatt tgtgaaagat t