Construct: ORF TRCN0000476168

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008328.1_s317c1
Derived from:
ccsbBroadEn_16076
DNA Barcode:
TCTGTTCCAACGTTATGTCGCCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PGLYRP3 (114771)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476168
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114771 PGLYRP3 peptidoglycan recognition p... NM_052891.2 100% 100%
2 human 114771 PGLYRP3 peptidoglycan recognition p... XM_011509119.1 100% 100%
3 human 114771 PGLYRP3 peptidoglycan recognition p... XM_011509120.2 95.8% 95.6% (many diffs)
4 human 114771 PGLYRP3 peptidoglycan recognition p... XM_011509118.1 90.4% 90.4% 55_162del
5 human 114771 PGLYRP3 peptidoglycan recognition p... XR_921736.1 50.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg gacgctgcca tggcttcttg ccttcttcat tctgggtctc caggcttggg
121atactcccac catcgtctcc cgcaaggagt ggggggcaag accgctcgcc tgcagggccc
181tgctgaccct gcctgtggcc tacatcatca cagaccagct cccagggatg cagtgccagc
241agcagagcgt ttgcagccag atgctgcggg ggttgcagtc ccattccgtc tacaccatag
301gctggtgcga cgtggcgtac aacttcctgg ttggggatga tggcagggtg tatgaaggtg
361ttggctggaa catccaaggc ttgcacaccc agggctacaa caacatttcc ctgggcatcg
421ccttctttgg caataagata ggcagcagtc ccagccctgc tgccttatca gctgcagagg
481gtctgatctc ctatgccatc cagaagggtc acctgtcgcc caggtatatt cagccacttc
541ttctgaaaga agagacctgc ctggaccctc aacatccagt gatgcccagg aaggtttgcc
601ccaacatcat caaacgatct gcttgggaag ccagagagac acactgccct aaaatgaacc
661tcccagccaa atatgtcatc atcatccaca ccgctggcac aagctgcact gtatccacag
721actgccagac tgtcgtccga aacaTACAGT CCTTTCACAT GGACACACGG AACTTTTGTG
781ACATTGGATA TCACTTCCTG GTGGGCCAGG ATGGTGGCGT GTATGAAGGG GTTGGATGGC
841ACATCCAAGG CTCTCACACT TATGGATTCA ACGATATTGC CCTAGGAATT GCCTTCATCG
901GCTACTTTGT AGAAAAGCCT CCAAATGCTG CAGCGCTGGA GGCGGCCCAG GACCTGATCC
961AGTGTGCCGT GGTTGAGGGG TACCTGACTC CAAACTACCT GCTGATGGGC CACAGTGACG
1021TGGTCAACAT CCTGTCCCCT GGGCAGGCTT TGTATAACAT CATCAGCACC TGGCCTCATT
1081TCAAGCACTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1141CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1201TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATCTGTT CCAACGTTAT GTCGCCAAAC
1261GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)