Construct: ORF TRCN0000476240

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010352.1_s317c1
Derived from:
ccsbBroadEn_13544
DNA Barcode:
CTTCAACCATAGCAGAAAAGTGCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXW12 (285231)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476240
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285231 FBXW12 F-box and WD repeat domain ... NM_001159927.1 58.3% 44.7% (many diffs)
2 human 285231 FBXW12 F-box and WD repeat domain ... NM_001159929.1 56.7% 56.8% (many diffs)
3 human 285231 FBXW12 F-box and WD repeat domain ... NM_207102.2 54.4% 54.5% (many diffs)
4 human 285231 FBXW12 F-box and WD repeat domain ... XM_017006224.1 54.4% 54.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
855
ORF length:
786
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gatctggtca agcccagtcc aggagttcca tttctcaaat ctggtaaccc
121tccctcagat gcatctcgcc atcactatgg atcggaaaaa aactatcaaa gtgtggaact
181gtcaggacag ggacgctctg gctgttctcc ccatgccaca gccctgttat tgcatggaag
241cctatcttac aaaggatggc ccattcctga tggttggcga tgctgcaggt gacatctaca
301catttacact gcctgggtta agagatgttt ctaaagttac tgcatttcaa tatggtattg
361tacttctaca ctgctctcct gacaagaaat gggtatttgc atgtgggaca tacagtcgta
421ccttgccaca ggtattcctc acagagtcct tactgagacc atcagaaggc agtgatcctc
481tgtctacctt tctcccacat aaattatgtg ccagcgccTG CTGGACCCCA AAGGTGAAAA
541ACAGGATAAC ACTGATGTCC CAAAGTAGCA CTGGAAAAAA GACAGAATTT ATCACCTTTG
601ATCTAACAAC CAAGAAGACT GGAGGCCAAA CAGTCATCCA AGCATATGAG ATCGCAAGTT
661TCCAGGTGGC AGCTCATCTG AAGTGCCCTA TCTGGATGGG AGCCAGTGAT GGATATATGA
721TTGTCTTTAC CAGTGGACCA TACTTGTTAC TCTTCAGCAT CACTGGCTTC CTGCTGCAAC
781GATTTGAGGA CCATCAGGCA GCCATCAACA ACTTCTGGGT GGTATGTATG ATTCTCCTCC
841ACTGCTTTTT GATCTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
901CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
961TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CTTCAACCAT AGCAGAAAAG
1021TGCAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)