Construct: ORF TRCN0000476243
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004877.1_s317c1
- Derived from:
- ccsbBroadEn_05218
- DNA Barcode:
- CCGGTCTCGCCCCTCTCCGAACGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLAC9 (219348)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476243
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219348 | PLAC9 | placenta associated 9 | NM_001012973.3 | 100% | 100% | |
| 2 | human | 219348 | PLAC9 | placenta associated 9 | NM_001331125.2 | 76.3% | 53.5% | (many diffs) |
| 3 | human | 389033 | PLAC9P1 | placenta associated 9 pseud... | NR_026740.1 | 35.6% | (many diffs) | |
| 4 | human | 219348 | PLAC9 | placenta associated 9 | NR_138551.2 | 31.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 384
- ORF length:
- 291
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGCGGCC CCTGCTCTGC GCGCTGACCG 121 GACTGGCCCT GCTCCGCGCC GCGGGCTCTT TGGCCGCTGC CGAACCCTTC AGCCCTCCGC 181 GAGGAGACTC AGCTCAGAGC ACAGCGTGTG ACAGACACAT GGCTGTGCAA CGCCGTCTAG 241 ATGTCATGGA GGAGATGGTA GAGAAGACCG TGGATCACCT GGGGACAGAG GTGAAAGGCC 301 TGCTGGGCCT GCTGGAGGAG CTGGCCTGGA ACCTGCCCCC GGGACCCTTC AGCCCCGCTC 361 CCGACCTTCT CGGAGATGGC TTCTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 421 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 481 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC CGGTCTCGCC 541 CCTCTCCGAA CGAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 601 att