Construct: ORF TRCN0000476279
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010762.1_s317c1
- Derived from:
- ccsbBroadEn_11512
- DNA Barcode:
- AATTGATATTGTTCCTCAGAAATG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF211 (10520)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476279
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10520 | ZNF211 | zinc finger protein 211 | NM_006385.5 | 96.2% | 92.4% | (many diffs) |
| 2 | human | 10520 | ZNF211 | zinc finger protein 211 | NM_198855.4 | 94.2% | 92.2% | (many diffs) |
| 3 | human | 10520 | ZNF211 | zinc finger protein 211 | NM_001265599.3 | 88.5% | 80% | (many diffs) |
| 4 | human | 10520 | ZNF211 | zinc finger protein 211 | NM_001265597.3 | 88.3% | 85% | (many diffs) |
| 5 | human | 10520 | ZNF211 | zinc finger protein 211 | NM_001265600.3 | 87.3% | 87.3% | 0_1ins219 |
| 6 | human | 10520 | ZNF211 | zinc finger protein 211 | NM_001322306.2 | 86.7% | 79.1% | (many diffs) |
| 7 | human | 10520 | ZNF211 | zinc finger protein 211 | NM_001265598.2 | 86.5% | 84.7% | (many diffs) |
| 8 | human | 10520 | ZNF211 | zinc finger protein 211 | NR_049754.3 | 44.3% | 1_302del;2031_3893del | |
| 9 | human | 10520 | ZNF211 | zinc finger protein 211 | NR_049753.3 | 43.5% | 1_375del;2104_3966del | |
| 10 | human | 10520 | ZNF211 | zinc finger protein 211 | NR_049752.3 | 42.6% | 1_302del;555_710del;2187_4049del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1797
- ORF length:
- 1728
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaggacgttg aggcagaggg aggttgaata tttttccaag gccacacaac 121 tggtgagagg cagcactaag gaccgaggcg cacaggttcc catagctaca gaggtgcttt 181 tcaaacttac acagggaagt gtgacctttg aagatgtggc cgtgtacttc tcctgggagg 241 aatgggatct ccttgatgag gctcagaaac acctgtactt cgatgtgatg ctggagaact 301 ttgcacttac gtcctccctg ggttgttggt gtggagtgga acatgaggaa acaccttctg 361 aacagagaat ttctggagaa agagtgccac agttcaggac ttccaaagaa ggttcatctt 421 cccagaatgc cgactcctgt gaaatatgtt gcctggtctt gagagatatt ttgcacttgg 481 ctgaacacca aggaacaaac tgcgggcaga aactacacac atgtggaaaa caattctaca 541 tcagtgcaaa tcttcaacag caccagaggc agcacattac agaggcacct ttcagaagtt 601 atgtggacac tgcctcgttt acacagagtt gcatagtcca tgtgtcggag aaacccttta 661 cctgcaggga gatcaggaaa gacttcctgg ccaacatgag gtttctccat caagacgcca 721 ctcaaacagg ggagaagcca aataacagta acaagtgtgc ggtggccttt tacagtggaa 781 aaagtcatca caactgggga aaatgcagta aagcctttag ccacatagac acacttgttc 841 aggaccagag aatcctcact agagaaggac tttttgagtg cagtaaatgt gggaaagcat 901 gtacgcgaag atgtaacctc attcagcacc agaaagtcca cagtgaagaa aggccttatg 961 aatgcaatga atgtggaaaa ttctttacct actactccag tttcattata catcagagag 1021 ttcatactgg agaaaggcct tatgcgtgcc ctgaatgtgg gaaatcgttt agtcagatat 1081 acagcctcaa tagccatagg aaagttcaca ctggagaaag gccttatgaa tgtggggaat 1141 gtgggaaatc ttttagccaa aggtccaacc tcatgcagca tcgcagagtt cacactggag 1201 aaaggcctta tgaatgcagc gaatgtggga aatcttttag ccaaaacttt agcctgatct 1261 accaccagag agttcacact ggagaaagac ctcatgagtg caatgaatgt ggaaaatcct 1321 ttagccgaag ctccagcctc attcaccacc ggagacttca cactggagaa agaccctatg 1381 agtgcagtaa atgtgggaag tcatttaagc aaagctccag cttcagttca catcggaaag 1441 tccacacagg ggaaaggcct tatgtgtgtg gggaatgtgg gaaaTCCTTT AGCCATAGCT 1501 CCAACCTTAA GAACCACCAG AGAGTTCACA CTGGAGAAAG ACCTGTTGAG TGCAGTGAAT 1561 GTAGCAAATC CTTTAGCTGT AAATCTAACC TCATTAAACA CCTGAGAGTT CACACTGGAG 1621 AAAGGCCTTA TGAGTGCAGT GAATGTGGGA AATCCTTTAG CCAAAGTTCT AGCCTCATTC 1681 AACACCGCAG AGTTCACACG GGAAAAAGGC CTTATCAGTG CAGTCAATGT GGGAAATCCT 1741 TTGGCTGCAA ATCTGTCCTC ATTCAACACC AGAGAGTTCA CATTGGAGAA AAGCCTTTGC 1801 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 1861 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 1921 ATATATCTTG TGGAAAGGAC GAAATTGATA TTGTTCCTCA GAAATGACGC GTTAAGTCga 1981 caatcaacct ctggattaca aaatttgtga aagatt