Construct: ORF TRCN0000476352

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002770.1_s317c1
Derived from:
ccsbBroadEn_07098
DNA Barcode:
ACAACCACCACATGATTTTCTTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRAF3 (7187)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476352
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7187 TRAF3 TNF receptor associated fac... NM_003300.4 99.9% 99.8% 14A>G
2 human 7187 TRAF3 TNF receptor associated fac... NM_145725.3 99.9% 99.8% 14A>G
3 human 7187 TRAF3 TNF receptor associated fac... XM_017021617.1 99.9% 99.8% 14A>G
4 human 7187 TRAF3 TNF receptor associated fac... XM_017021618.1 99.9% 99.8% 14A>G
5 human 7187 TRAF3 TNF receptor associated fac... NM_145726.2 95.5% 95.4% 14A>G;649_650ins75
6 human 7187 TRAF3 TNF receptor associated fac... XM_017021619.1 95.5% 95.4% 14A>G;649_650ins75
7 human 7187 TRAF3 TNF receptor associated fac... XM_011537116.3 90.7% 90.6% 14A>G;567_568ins156
8 human 7187 TRAF3 TNF receptor associated fac... XM_011537117.3 90% 89.9% 14A>G;649_650ins168
9 human 7187 TRAF3 TNF receptor associated fac... NM_001199427.2 85.3% 85.2% 14A>G;568_569ins249
10 human 7187 TRAF3 TNF receptor associated fac... XM_011537118.3 85.3% 85.2% 14A>G;568_569ins249
11 human 7187 TRAF3 TNF receptor associated fac... XM_017021620.2 50.4% 48.7% (many diffs)
12 mouse 22031 Traf3 TNF receptor-associated fac... NM_011632.3 88.8% 95.9% (many diffs)
13 mouse 22031 Traf3 TNF receptor-associated fac... XM_006515798.2 88.8% 95.9% (many diffs)
14 mouse 22031 Traf3 TNF receptor-associated fac... XM_006515799.1 88.8% 95.9% (many diffs)
15 mouse 22031 Traf3 TNF receptor-associated fac... XM_006515800.2 88.8% 95.9% (many diffs)
16 mouse 22031 Traf3 TNF receptor-associated fac... XM_006515801.2 88.8% 95.9% (many diffs)
17 mouse 22031 Traf3 TNF receptor-associated fac... NM_001286122.1 84.5% 91.5% (many diffs)
18 mouse 22031 Traf3 TNF receptor-associated fac... XM_006515802.2 84.5% 91.5% (many diffs)
19 mouse 22031 Traf3 TNF receptor-associated fac... XM_017315042.1 84.5% 91.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1773
ORF length:
1704
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggagtcgagt agaaagatgg actctcctgg cgcgctgcag actaacccgc
121cgctaaagct gcacactgac cgcagtgctg ggacgccagt ttttgtccct gaacaaggag
181gttacaagga aaagtttgtg aagaccgtgg aggacaagta caagtgtgag aagtgccacc
241tggtgctgtg cagcccgaag cagaccgagt gtgggcaccg cttctgcgag agctgcatgg
301cggccctgct gagctcttca agtccaaaat gtacagcgtg tcaagagagc atcgttaaag
361ataaggtgtt taaggataat tgctgcaaga gagaaattct ggctcttcag atctattgtc
421ggaatgaaag cagaggttgt gcagagcagt taatgctggg acatctgctg gtgcatttaa
481aaaatgattg ccattttgaa gaacttccat gtgtgcgtcc tgactgcaaa gaaaaggtct
541tgaggaaaga cctgcgagac cacgtggaga aggcgtgtaa ataccgggaa gccacatgca
601gccactgcaa gagtcaggtt ccgatgatcg cgctgcagaa acacgaagac accgactgtc
661cctgcgtggt ggtgtcctgc cctcacaagt gcagcgtcca gactctcctg aggagcgagt
721tgagtgcaca cttgtcagag tgtgtcaatg cccccagcac ctgtagtttt aagcgctatg
781gctgcgtttt tcaggggaca aaccagcaga tcaaggccca cgaggccagc tccgccgtgc
841agcacgtcaa cctgctgaag gagtggagca actcgctcga aaagaaggtt tccttgttgc
901agaatgaaag tgtagaaaaa aacaagagca tacaaagttt gcacaatcag atatgtagct
961ttgaaattga aattgagaga caaaaggaaa tgcttcgaaa taatgaatcc aaaatccttc
1021atttacagcg agtgatagac agccaagcag agaaactgaa ggagcttgac aaggagatcc
1081ggcccttccg gcagaactgg gaggaagcag acagcatgaa gagcagcgtg gagtccctcc
1141agaaccgcgt gaccgagctg gagagcgtgg acaagagcgc ggggcaagtg gctcggaaca
1201caggcctgct ggagtcccag ctgagccggc atgaccagat gctgagtgtg cacgacatcc
1261gcctagccga catggacctg cgcttccagg tcctggagac cgccagctac aatggagtgc
1321tcatctggaa gattcgcgac tacaagcggc ggaagcagga ggccgtcatg gggaagaccc
1381tgtcccttta cagccagcct ttctacactg gttactttGG CTATAAGATG TGTGCCAGGG
1441TCTACCTGAA CGGGGACGGG ATGGGGAAGG GGACGCACTT GTCGCTGTTT TTTGTCATCA
1501TGCGTGGAGA ATATGATGCC CTGCTTCCTT GGCCGTTTAA GCAGAAAGTG ACACTCATGC
1561TGATGGATCA GGGGTCCTCT CGACGTCATT TGGGAGATGC ATTCAAGCCC GACCCCAACA
1621GCAGCAGCTT CAAGAAGCCC ACTGGAGAGA TGAATATCGC CTCTGGCTGC CCAGTCTTTG
1681TGGCCCAAAC TGTTCTAGAA AATGGGACAT ATATTAAAGA TGATACAATT TTTATTAAAG
1741TCATAGTGGA TACTTCGGAT CTGCCCGATC CCTTGCCAAC TTTCTTGTAC AAAGTGGTTG
1801ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1861GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAC
1921AACCACCACA TGATTTTCTT CCACGCGTTA AGTCgacaat caacctctgg attacaaaat
1981ttgtgaaaga tt

Download FASTA (ORF) (Full)