Construct: ORF TRCN0000476498
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012653.1_s317c1
- Derived from:
- ccsbBroadEn_09852
- DNA Barcode:
- CTATTTTAGCCGGCAGAGTGCCGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR9Q1 (219956)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476498
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219956 | OR9Q1 | olfactory receptor family 9... | NM_001005212.4 | 99.8% | 100% | 348C>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 999
- ORF length:
- 930
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcagagatg aacctcacct tggtgaccga gttcctcctt attgcattca 121 ctgaatatcc tgaatgggca ctccctctct tcctcttgtt tttatttatg tatctcatca 181 ccgtattggg gaacttagag atgattattc tgatcctcat ggatcaccag ctccacgctc 241 caatgtattt ccttctgagt cacctcgctt tcatggacgt ctgctactca tctatcactg 301 tcccccagat gctggcagtg ctgctggagc atggggcagc tttatcttac acacgctgtg 361 ctgctcagtt ctttctgttc accttctttg gttccatcga ctgctacctc ttggcgctca 421 tggcctatga ccgctacttg gctgtgtgcc agcccctgct ttatgtcacc atcctgacac 481 agcaggcccg cttgagtctt gtggctgggg cttacgttgc tggtctcatc agtgccttgg 541 tgcggacagt ctcagccttc actctctcct tctgtggaac cagtgagatt gactttattt 601 tctgtgacct ccctcctctg ttaaagttga cctgtggGGA GAGCTACACT CAAGAAGTGC 661 TGATTATTAT GTTTGCCATT TTTGTCATCC CTGCTTCCAT GGTGGTGATC TTGGTGTCCT 721 ACCTGTTTAT CATCGTGGCC ATCATGGGGA TCCCTGCTGG AAGCCAGGCC AAGACCTTCT 781 CCACCTGCAC CTCCCACCTC ACTGCTGTGT CACTCTTCTT TGGTACCCTC ATCTTCATGT 841 ACTTGAGAGG TAACTCAGAT CAGTCTTCGG AGAAGAATCG GGTAGTGTCT GTGCTTTACA 901 CAGAGGTCAT CCCCATGTTG AATCCCCTCA TCTACAGCCT GAGGAACAAG GAAGTGAAGG 961 AGGCCCTGAG AAAAATTCTC AATAGAGCCA AGTTGTCCTT GCCAACTTTC TTGTACAAAG 1021 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1081 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1141 ACGACTATTT TAGCCGGCAG AGTGCCGAAC GCGTTAAGTC gacaatcaac ctctggatta 1201 caaaatttgt gaaagatt