Construct: ORF TRCN0000476587

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002982.1_s317c1
Derived from:
ccsbBroadEn_01818
DNA Barcode:
CTCTGCAATCATCATATCGTTACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF200 (7752)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476587
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7752 ZNF200 zinc finger protein 200 NM_003454.4 100% 100%
2 human 7752 ZNF200 zinc finger protein 200 NM_198088.3 100% 100%
3 human 7752 ZNF200 zinc finger protein 200 XM_005255556.1 100% 100%
4 human 7752 ZNF200 zinc finger protein 200 XM_006720941.2 100% 100%
5 human 7752 ZNF200 zinc finger protein 200 NM_001145446.2 99.7% 99.7% 465_466insGCA
6 human 7752 ZNF200 zinc finger protein 200 NM_001145447.2 99.7% 99.7% 465_466insGCA
7 human 7752 ZNF200 zinc finger protein 200 NM_001145448.2 99.7% 99.7% 465_466insGCA
8 human 7752 ZNF200 zinc finger protein 200 NM_198087.3 99.7% 99.7% 336_337insGAG
9 human 7752 ZNF200 zinc finger protein 200 XM_017023648.1 41.3% 39.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1251
ORF length:
1185
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat ggctgcaaaa gtggttccta tgcccccaaa gccaaagcag tcctttatac
121tgagagttcc gccagactcc aagctgggcc aagacctact tcgagatgcc actaacgggc
181ccaagaccat ccaccagcta gtgctggagc acttcctcac cttcttgccc aagccaagcc
241tggtccagcc cagtcagaaa gtcaaggaga ccttggttat tatgaaagat gtgagctcaa
301gccttcagaa cagagtgcat cctcgtccct tggtgaagct tctgcccaaa ggagtccaaa
361aggaacaaga gacagtgtct ctgtatttga aagctaaccc tgaggagctg gtggtctttg
421aggatttgaa tgtatttcac tgccaggaag aatgtgtgag cttggatcct actcaacaac
481tcacgtcaga gaaggaagat gacagcagtg tcggggaaat gatgttactg gcagtcaatg
541gcagtaatcc tgaaggtgaa gatcctgaga gggaacctgt agaaaatgaa gattatagag
601aaaagtcttc agatgatgat gaaatggatt cttccttggt ctctcagcag cctcccgata
661accaggaaaa ggaacgacta aatacatcca ttccacaaaa aaggaaaatg agaaatctgt
721tagttaccat tgagaatgat actcctctag aggaactctc aaaatatgta gacatcagta
781ttattgccct tactcgaaat cggaggacaa ggagatggta cacttgtcca ctgtgtggga
841aacagtttaa tgaaagttct tacctcattt cccaccagag gaccCACACT GGAGAAAAAC
901CCTATGACTG TAATCACTGT GGGAAAAGCT TCAATCATAA AACAAACCTC AATAAACATG
961AGCGAATTCA TACAGGAGAG AAACCTTATT CCTGTTCTCA GTGTGGAAAA AACTTCCGTC
1021AGAATTCTCA TCGGAGTCGT CATGAAGGAA TCCATATAAG GGAGAAGATA TTTAAGTGTC
1081CAGAATGTGG GAAAACCTTC CCAAAGAATG AGGAGTTTGT GCTTCATCTG CAGAGTCATG
1141AGGCTGAGAG ACCATATGGT TGCAAAAAAT GTGGGAGAAG ATTTGGTCGG CTGTCAAACT
1201GTACCCGGCA TGAGAAAACC CACTCAGCCT GTAAGACCCG AAAGCAGAAG TACCCAACTT
1261TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1321CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1381CTTGTGGAAA GGACGACTCT GCAATCATCA TATCGTTACC ACGCGTTAAG TCgacaatca
1441acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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