Construct: ORF TRCN0000476663

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015416.1_s317c1
Derived from:
ccsbBroadEn_10006
DNA Barcode:
TAGTCTTAGCACCTTTACGATAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VSX2 (338917)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476663
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 338917 VSX2 visual system homeobox 2 NM_182894.3 99.9% 100% 471C>T
2 mouse 12677 Vsx2 visual system homeobox 2 NM_007701.3 91.3% 96.6% (many diffs)
3 mouse 12677 Vsx2 visual system homeobox 2 NM_001301427.1 86.7% 91.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1152
ORF length:
1083
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gacggggaaa gcaggggaag cgctgagcaa gcccaaatcc gagacagtgg
121ccaagagtac ctcggggggc gccccggcca ggtgcactgg gttcggcatc caggagatcc
181tgggcttgaa caaggagccc ccgagctccc acccgcgggc agcgctcgac ggcctggccc
241ccgggcactt gctggcggcg cgctcagtgc tcagccccgc gggggtgggc ggcatggggc
301ttctggggcc cggggggctc cctggcttct acacgcagcc caccttcctg gaagtgctgt
361ccgacccgca gagcgtccac ttgcagccat tgggcagagc atcggggccg ctggacacca
421gccagacggc cagctcggat tctgaagatg tttcctccag cgatcgaaaa atgtccaaat
481ctgctttaaa ccagaccaag aaacggaaga agcggcgaca caggacaatc tttacctctt
541accagctaga ggagctggag aaggcattca acgaagccca ctacccagac gtctatgccc
601gggagatgct ggccatgaaa acggagctgc cggaagacag gatacaggtc tggttccaga
661accgtcgagc caagtggagg aagcgggaga agtgctgggg ccggagcagt gtcatggcgg
721agtatgggct cTACGGGGCC ATGGTGCGGC ACTCCATCCC CCTGCCCGAG TCCATCCTCA
781AGTCAGCCAA GGATGGCATC ATGGACTCCT GTGCCCCGTG GCTACTGGGG ATGCACAAAA
841AGTCGCTGGA GGCAGCAGCC GAGTCGGGGA GGAAGCCCGA GGGGGAACGC CAGGCCCTGC
901CCAAGCTCGA CAAGATGGAG CAGGACGAGC GGGGCCCCGA CGCTCAGGCG GCCATCTCCC
961AGGAGGAACT GAGGGAGAAC AGCATTGCGG TGCTCCGGGC CAAAGCTCAG GAGCACAGCA
1021CCAAAGTGCT GGGGACTGTG TCTGGGCCGG ACAGCCTGGC CCGGAGTACC GAGAAGCCAG
1081AGGAGGAGGA GGCCATGGAT GAAGACAGGC CGGCGGAGAG GCTCAGTCCA CCGCAGCTGG
1141AGGACATGGC TTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1201ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1261CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATAG TCTTAGCACC TTTACGATAA
1321TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)