Construct: ORF TRCN0000476718

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006835.1_s317c1
Derived from:
ccsbBroadEn_08864
DNA Barcode:
TAATATAACGCCTCGTATCTGATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTARC1 (64757)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476718
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64757 MTARC1 mitochondrial amidoxime red... NM_022746.4 99.8% 99.4% 493A>G;560T>A
2 human 64757 MTARC1 mitochondrial amidoxime red... XM_011509900.3 95% 94.6% 493A>G;560T>A;752_802del
3 human 64757 MTARC1 mitochondrial amidoxime red... XM_017002096.2 72.2% 72.4% (many diffs)
4 human 64757 MTARC1 mitochondrial amidoxime red... XM_017002097.2 69.5% 69.1% 0_1ins306;187A>G;254T>A
5 human 64757 MTARC1 mitochondrial amidoxime red... XM_011509903.3 68.8% 68.9% (many diffs)
6 human 64757 MTARC1 mitochondrial amidoxime red... XR_001737362.1 67.3% (many diffs)
7 human 64757 MTARC1 mitochondrial amidoxime red... XM_011509904.3 66.1% 65.8% (many diffs)
8 human 64757 MTARC1 mitochondrial amidoxime red... XR_921908.1 58.2% (many diffs)
9 human 64757 MTARC1 mitochondrial amidoxime red... XR_002957377.1 35.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1077
ORF length:
1011
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg cgccgccggc tcctccgcgc tggcgcgctt tgtcctcctc gcgcaatccc
121ggcccgggtg gctcggggtt gccgcgctgg gcctgaccgc ggtggcgctg ggggctgtcg
181cctggcgccg cgcatggccc acgcggcgcc ggcggctgct gcagcaggtg ggcacagtgg
241cgcagctctg gatctaccct gtgaaatcct gcaagggggt gccggtgagc gaggcggagt
301gcacggccat ggggctgcgc agcggcaacc tgcgggacag gttttggctt gtgatcaacc
361aggagggaaa catggttact gctcgccagg aacctcgcct ggtcctgatt tccctgacct
421gcgatggtga caccctgact ctcagtgcag cctacacaaa ggacctacta ctgcctatca
481aaacgcccac cacaaatgca gtgcacaagt gcagagtgca cggcctggag atagagggca
541gggactgtgg cgaggccgcc gcccagtgga taaccagctt cctgaagtca cagccctacc
601gcctggtgca cttcgagcct cacaagcgac cgagacgtcc tcatcaaata gcagacttgt
661tccgacccaa ggaccagatt gcttactcag acaccagccc attcttgatc ctttcTGAGG
721CGTCGCTGGC GGATCTCAAC TCCAGGCTAG AGAAGAAAGT TAAAGCAACC AACTTCAGGC
781CCAATATTGT AATTTCAGGA TGCGATGTCT ATGCAGAGGA TTCTTGGGAT GAGCTTCTTA
841TTGGTGACGT GGAACTGAAA AGGGTGATGG CTTGTTCCAG ATGCATTTTA ACCACAGTGG
901ACCCAGACAC CGGTGTCATG AGCAGGAAGG AACCGCTGGA AACACTGAAG AGTTATCGCC
961AGTGTGACCC TTCAGAACGA AAGTTATATG GAAAATCACC ACTCTTTGGG CAGTATTTTG
1021TGCTGGAAAA CCCAGGGACC ATCAAAGTGG GAGACCCTGT GTACCTGCTG GGCCAGTACC
1081CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1141TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1201ATATATCTTG TGGAAAGGAC GATAATATAA CGCCTCGTAT CTGATTACGC GTTAAGTCga
1261caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)