Construct: ORF TRCN0000476719
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009416.1_s317c1
- Derived from:
- ccsbBroadEn_15042
- DNA Barcode:
- CCGCATTTCATGTATTGATGGAAC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- NMRK2 (27231)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476719
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_024451452.1 | 82.5% | 52.8% | 324_430del;596C>T |
| 2 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_006722725.3 | 80.5% | 51.6% | 116_130del;339_445del;611C>T |
| 3 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NM_170678.2 | 73.9% | 44.6% | 324_502del;668C>T |
| 4 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NM_001289117.1 | 72.3% | 43.7% | 116_130del;339_517del;683C>T |
| 5 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NR_110316.1 | 69.4% | (many diffs) | |
| 6 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_017026597.1 | 62.2% | 82.7% | 324_395del;435_436ins148 |
| 7 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_006722726.3 | 60.7% | 80% | 116_130del;339_410del;450_451ins148 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 432
- ORF length:
- 363
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaagctcatc gtgggcatcg gaggcatgac caacggcggc aagaccacgc 121 tgaccaacag cctgctcaga gccctgccca actgctgcgt gatccatcag gatgacttct 181 tcaagcccca agaccaaata gcagttgggg aagacggctt caaaCAGTGG GACGTGCTGG 241 AGTCTCTGGA CATGGAGGCC ATGCTGGACA CCGTGCAGGC CTGGCTGAGC AGCCCGCAGA 301 AGTTTGCCCG TGCCCACGGG GTCAGCGTCC AGCCAGAGGC CTCGGACACC CACATCCTCC 361 TCCTGGAAGG CTTCCTGCTC TACAGCTACA ATCTACCTGG ACGGCATGAA GTCCCGAGAG 421 GAGCTCTTCC GTGAAGTCCT GGAAGACATT CAGAACTCGC TGCTGAACCG CTCCCAGGAA 481 TCAGCCCCCT CCCCGGCTCG CCCAGCCAGG ACACAGGGAC CCGGACGCGG ATGCGGCCAC 541 AGAACGGCCA GGCCTGTAGC GTCCCAGCAG GACAGCATGT TGCCAACTTT CTTGTACAAA 601 GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA 661 TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG 721 GACGACCGCA TTTCATGTAT TGATGGAACA CGCGTTAAGT Cgacaatcaa cctctggatt 781 acaaaatttg tgaaagatt