Construct: ORF TRCN0000477172
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008468.1_s317c1
- Derived from:
- ccsbBroadEn_12533
- DNA Barcode:
- AGACCTAATCGTTCAGTAAAGAAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C7orf26 (79034)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477172
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79034 | C7orf26 | chromosome 7 open reading f... | NM_001303039.2 | 99.9% | 100% | 1005T>C |
| 2 | human | 79034 | C7orf26 | chromosome 7 open reading f... | NM_024067.4 | 78.3% | 78.3% | 191_247del;643_876del;1296T>C |
| 3 | human | 79034 | C7orf26 | chromosome 7 open reading f... | XM_011515518.3 | 65.7% | 61.1% | (many diffs) |
| 4 | human | 79034 | C7orf26 | chromosome 7 open reading f... | XM_005249845.5 | 59.7% | 50.6% | (many diffs) |
| 5 | human | 79034 | C7orf26 | chromosome 7 open reading f... | XR_926946.3 | 55.3% | (many diffs) | |
| 6 | human | 79034 | C7orf26 | chromosome 7 open reading f... | XM_017012614.2 | 45.7% | 36.7% | (many diffs) |
| 7 | human | 79034 | C7orf26 | chromosome 7 open reading f... | XM_017012615.1 | 43.5% | 21.5% | (many diffs) |
| 8 | mouse | 231868 | E130309D02Rik | RIKEN cDNA E130309D02 gene | NM_172726.4 | 70% | 75.6% | (many diffs) |
| 9 | mouse | 231868 | E130309D02Rik | RIKEN cDNA E130309D02 gene | XM_006504697.1 | 59.2% | 64.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1122
- ORF length:
- 1056
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag cgacatccgc cactcgctgc tgcgccgcga tgcgctgagc gccgccaagg 121 aggtgttgta ccacctggac atctacttca gcagccagct gcagagcgcg ccgctgccca 181 tcgtggacaa gggccccgtg gagctgctgg aggagttcgt gttccaggtg cccaaggagc 241 gcagcgcgca gcccaaggag caaaccaagg actctgttcg gcagattatt ttttcatccc 301 ttttcagccc tcaagggaac aaagccgatg acagccggat gagcttgttg ggaaaactgg 361 tctccatggc ggtggctgtg tgtcgaatcc cggtgttgga gtgtgctgcc tcctggcttc 421 agcggacgcc cgtggtttac tgtgtgaggt tagccaaggc ccttgtagat gactactgct 481 gtttggtgcc gggatccatt cagacgctga agcagatatt cagtgccagc ccgagattct 541 gctgccagtt catcacctcc gttaccgcgc tctatgacct gtcatcagat gacctcattc 601 cacctatgga cttgcttgaa atgattgtca cctggatttt tgaggaccca agcgtcctgc 661 aagtgctcat gacgctgcag ctgcacctga ccgagaagaa tctgtatggg cgcctggggc 721 tgatcctctt cgaccacatg gtcccgctgg tagaggagat caacaggttg gcggatgaac 781 tgaaccccct caacgcctcc caggagattg agctctcgct ggaccggctg gcgcaggctc 841 TGCAGGTGGC CATGGCCTCA GGAGCTCTGC TGTGCACGAG AGATGACCTG AGAACCTTGT 901 GCTCCAGGCT GCCCCATAAT AACCTCCTCC AGCTGGTGAT CTCGGGTCCC GTGCAGCAGT 961 CGCCTCACGC CGCGCTCCCC CCGGGGTTCT ACCCCCACAT CCACACGCCC CCGCTGGGCT 1021 ACGGGGCTGT CCCGGCCCAC CCCGCCGCCC ACCCCGCCCT GCCCACGCAC CCCGGCCACA 1081 CCTTCATCTC CGGCGTGACC TTTCCCTTCA GGCCCATCCG CTACCCAACT TTCTTGTACA 1141 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1201 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1261 AGGACGAAGA CCTAATCGTT CAGTAAAGAA CACGCGTTAA GTCgacaatc aacctctgga 1321 ttacaaaatt tgtgaaagat t