Construct: ORF TRCN0000477301
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014079.1_s317c1
- Derived from:
- BRDN0000392880
- DNA Barcode:
- TCTGAATATCTTACGAAATCTAGC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CCDC102A (92922)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477301
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92922 | CCDC102A | coiled-coil domain containi... | NM_033212.4 | 99% | 1.6% | (many diffs) |
| 2 | human | 92922 | CCDC102A | coiled-coil domain containi... | XM_011523469.2 | 99% | 1.6% | (many diffs) |
| 3 | mouse | 234582 | Ccdc102a | coiled-coil domain containi... | NM_001033533.3 | 85.8% | 1.6% | (many diffs) |
| 4 | mouse | 234582 | Ccdc102a | coiled-coil domain containi... | XM_011248354.2 | 85.8% | 1.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 117
- ORF length:
- 51
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag ccacgggccc aggctgagtc cccgcagctg tccaagggca gcctcctgac 121 catcctgggc agcccgtcgc cggagcgcat ggggcctgcc gactccttgc cgcccacgcc 181 gcccagcggc acgccctcgc ccgggccgcc gcccgcactg cccctgcccc ccgcgcccgc 241 gctgctggcc gacggcgact gggagagccg cgaggagctg cggctgcggg agctggagga 301 ggcgcgggcg cgggcggcgc agatggagaa gaccatgcgc tggtggtcgg actgcactgc 361 caattggcgc gagaaatgga gcaaggtgcg cgctgagcgc aaccgcgcgc gcgaggaggt 421 gcgccagctg cgccagcgcc tggacgcgct caccaaggag ctggcgggcg cacggcgcga 481 gcgccaagag gcgcagggcg agtgcgaggc acggggccgc gagctggcgc ggctgagggg 541 cgcccggggg gtcgccgacc agacgcgcga cggccccgag ccggaagcgg agcgcgagcc 601 agtgcgtgac gtcgggtccg agaggccgcc aggcagccag gaactggagc tggtggagag 661 cctgctgaag agcatgccag aggagtctga ggactgctgg gaggcgcgca gcctgggggc 721 tgggggcccg cggggcagct caggccgcca ggagcgcagc cggctaccct gggaggacac 781 agctgccacg gaggaggagg cctccaagtt gaccgccctg cggctacggc tggatgagtc 841 ccagaaggtg ctgctcaagg agcgagagga taaactggcg ttgagcagga acattgagaa 901 gctagagggg gagctcagcc agtggaagat caagtatgag gagctgagca agaccaagca 961 ggagatgctc aagcagctca gcatcctgaa ggaggcgcac caggacgagc tgggccgcat 1021 gtctgaggac ctggaagatg agctcggtgc acgctccagc atggaccgga aaatggccga 1081 gctgaggggc gagatggagc ggctgcaggc cgaaaacgct gcggagtggg gccgccggga 1141 gcggctggag acagagaaac tgggccttga gcgggagaac aagaagctgc gggcacaggt 1201 cggagacctg gaggaggcgc tggcccggcg gcggcggcaa acagccagcg cactggactg 1261 cgacctgagg gccagccagg ccgcgctctt cgagaagaac aaggagctgg cagacctgaa 1321 gcatgtgcat ggcaagctga agaagcagtt ccaggagaag gtggcagagc tggcacatgc 1381 caaccggcgg gtggagcagc acgaggctga ggtgaagaag ctgcggctgc gggtggagga 1441 gctcaagaag ccacgggccc aggctgagga cgagctggaC GAGGCCCACA ACCAGGCACG 1501 TAAGCTGCAG CGGTCGCTGG ACGAGCAGAC GGAGCAGAGC GAGAACCTGC AAGTGCAACT 1561 GGAGCACCTG CAGTCCAGGC TCCGCAGGCA GCAGCAGAAC GCTCCCCTCT TCGGGAAGAT 1621 CCGCAGTGCT CGCTTTGGCA CCGAGGAGGC CGAGGATGGA ACCAGTGACC TGGACGAGGA 1681 CGAGGACCTG CAAATCCAGG TGGCCTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG 1741 TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA 1801 ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCTGAATAT 1861 CTTACGAAAT CTAGCACGCG TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa 1921 agatt