Construct: ORF TRCN0000477302
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009316.1_s317c1
- Derived from:
- ccsbBroadEn_12563
- DNA Barcode:
- AGAAGGGGACCTTGATTCCCGAAA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- FCRL2 (79368)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477302
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_017002319.1 | 52.6% | 45.5% | (many diffs) |
| 2 | human | 79368 | FCRL2 | Fc receptor like 2 | NM_030764.4 | 47.2% | 41.6% | (many diffs) |
| 3 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_017002317.1 | 45.8% | 33.3% | (many diffs) |
| 4 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_011509974.3 | 45.7% | 39.5% | (many diffs) |
| 5 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_017002316.1 | 43.2% | 37.5% | (many diffs) |
| 6 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_011509976.2 | 42.9% | 37.4% | (many diffs) |
| 7 | human | 79368 | FCRL2 | Fc receptor like 2 | XM_011509975.3 | 41.5% | 35.4% | (many diffs) |
| 8 | human | 79368 | FCRL2 | Fc receptor like 2 | NM_001159488.2 | 34.7% | 28.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 834
- ORF length:
- 765
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtgggaatgg aaaatatgca acagccatgg ggccaggccc tttgctgagc 121 ctgcaggttg ggagtttgtg aatctattga ggcatcacaa atcttttctg atagcccctc 181 tgtgtctgtc agttccagtg tctcgccctg tcctcaccct caggtctcct ggggcccagg 241 ctgcagtggg ggacctgctg gagcttcact gtgaggccct gagaggctct cccccaatct 301 tgtaccaatt ttatcatgag gatgtcaccc ttgggaacag ctcggccccc tctggaggag 361 gggcctcctt caacctctct ttgactgcag aacattctgg aaactactcc tgtgaggcca 421 acaacggcct gggggcccag tgcagtgagg cagtgccagt ctccatctca ggacctgatg 481 gctatagaag agaccTCATG ACAGCTGGAG TTCTCTGGGG ACTGTTTGGT GTCCTTGGTT 541 TCACTGGTGT TGCTTTGCTG TTGTATGCCT TGTTCCACAA GATATCAGGA GAAAGTTCTG 601 CCACTAATGA ACCCAGAGGG GCTTCCAGGC CAAATCCTCA AGAGTTCACC TATTCAAGCC 661 CAACCCCAGA CATGGAGGAG CTGCAGCCAG TGTATGTCAA TGTGGGCTCT GTAGATGTGG 721 ATGTGGTTTA TTCTCAGGTC TGGAGCATGC AGCAGCCAGA AAGCTCAGCA AACATCAGGA 781 CACTTCTGGA GAACAAGGAC TCCCAAGTCA TCTACTCTTC TGTGAAGAAA TCATAGCCAA 841 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 901 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 961 TATCTTGTGG AAAGGACGAA GAAGGGGACC TTGATTCCCG AAAACGCGTT AAGTCgacaa 1021 tcaacctctg gattacaaaa tttgtgaaag att