Construct: ORF TRCN0000477475

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005978.1_s317c1
Derived from:
ccsbBroadEn_14060
DNA Barcode:
CTACCCTCTCCAGGGCCCTCTATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MID2 (11043)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477475
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11043 MID2 midline 2 XM_017029239.2 99.9% 99.8% 2048C>T
2 human 11043 MID2 midline 2 NM_052817.3 97.1% 97% 1_60del;2108C>T
3 human 11043 MID2 midline 2 XM_005262062.5 95.7% 95.6% 1286_1375del;2138C>T
4 human 11043 MID2 midline 2 NM_012216.4 93.1% 93% 1_60del;1346_1435del;2198C>T
5 mouse 23947 Mid2 midline 2 NM_011845.2 94% 99.2% (many diffs)
6 mouse 23947 Mid2 midline 2 XM_017318482.1 94% 99.2% (many diffs)
7 mouse 23947 Mid2 midline 2 XM_006528523.3 91.3% 96.4% (many diffs)
8 mouse 23947 Mid2 midline 2 XM_006528524.3 90% 95.1% (many diffs)
9 mouse 23947 Mid2 midline 2 XM_006528522.3 87.6% 92.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2121
ORF length:
2055
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga aacactggag tctgaattga cctgtccaat ctgcctagag ttgtttgaag
121acccccttct gctcccttgt gctcacagcc tctgcttcag ctgtgcccat cgcattttgg
181tatcaagctg cagctctggt gaatccattg aacccattac tgctttccag tgtcctacct
241gcaggtatgt tatctcgctg aaccaccggg gcctggatgg cctcaagagg aatgtgactc
301tgcagaacat tattgatcgc ttccagaagg cttcagtcag tgggcccaat tcccctagtg
361agagccgccg ggaaaggact tacaggccca ccactgccat gtctagcgag cgaattgctt
421gccaattctg tgagcaggac ccgccaaggg atgcagtaaa aacatgcatc acctgtgagg
481tctcctactg tgaccgttgc ctgcgggcca cgcaccccaa caagaaacct ttcaccagcc
541accgcctggt ggaaccagtg ccagacacac atcttcgagg gatcacctgc ctggaccatg
601agaatgagaa agtgaacatg tactgtgtat ctgatgacca attgatctgt gccttatgca
661aactggtggg tcgtcaccga gaccatcagg tcgcatccct gaatgatcga tttgagaaac
721tcaagcaaac tctggagatg aacctcacca acctggttaa gcgcaacagc gaactagaaa
781atcaaatggc caaactaata cagatctgcc agcaggttga ggtgaatact gctatgcatg
841aggcaaaact tatggaagaa tgtgacgagt tggtagagat catccagcag aggaagcaaa
901tgatcgctgt caaaatcaaa gagacaaagg ttatgaaact gagaaagttg gcacagcagg
961ttgctaattg ccgccagtgt cttgaacggt caacagtcct catcaaccaa gctgagcata
1021tcctgaaaga aaatgaccag gcacggtttc tacagtctgc aaaaaatatt gctgagaggg
1081tcgctatggc aactgcatct tctcaagttc tgattccaga catcaatttt aatgatgcct
1141ttgaaaactt tgctttagat ttttccagag aaaagaaact gctagagggg ttagattatt
1201taacagcccc aaacccacca tctatccgag aagaactctg tactgcctcc catgacacca
1261ttacagtcca ctggatctcg gatgatgagt tcagcatcag ctcctatgag cttcagtaca
1321ccatattcac tggccaggct aacttcatca gcctgtataa ttcagtagac agctggatga
1381ttgttcccaa cattaaacag aaccattaca cagtgcatgg actccagagc gggactcgct
1441acatcttcat cgttaaagcc ataaaccaag ccggcagccg gaacagtgaa cctacccgac
1501taaaaacaaa cagccaaccc tttaaattgg atcccaaaat gactcacaag aagttgaaga
1561tctccaatga tggattgcag atggagaagg atgaaagctc tctaaagaag agccacaccc
1621cagagaggtt tagtggcaca gggtgctatg gggcagcagg aaatatattc attgacagtg
1681gctgccacta ttgggaggtg gtcatgggtt cctcaacatg gtatgcaatt ggcattgcct
1741acaaatcagc tccaaagaat gaatggattG GCAAGAATGC CTCCTCATGG GTCTTCTCTC
1801GCTGCAATAG TAACTTCGTG GTGAGACACA ACAACAAGGA AATGCTGGTG GATGTGCCCC
1861CACACCTGAA GCGTCTGGGT GTCCTCCTGG ATTATGACAA CAATATGCTG TCTTTCTATG
1921ACCCAGCTAA CTCTCTCCAT CTTCATACTT TTGATGTGAC CTTCATTCTT CCAGTTTGTC
1981CAACATTTAC AATCTGGAAC AAATCCCTAA TGATCCTGTC TGGCTTGCCT GCCCCAGATT
2041TTATTGATTA CCCTGAGCGG CAGGAATGCA ACTGCAGGCC TCAAGAATCC CCTTATGTTT
2101CTGGGATGAA AATCTGTCAT TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
2161CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
2221AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACTAC CCTCTCCAGG
2281GCCCTCTATC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)