Construct: ORF TRCN0000477485
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009194.1_s317c1
- Derived from:
- ccsbBroadEn_05434
- DNA Barcode:
- ATCTTGTTATACAGTCTTCCTCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NLRP10 (338322)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477485
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338322 | NLRP10 | NLR family pyrin domain con... | NM_176821.4 | 100% | 100% | |
| 2 | human | 338322 | NLRP10 | NLR family pyrin domain con... | XM_011520043.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2034
- ORF length:
- 1965
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggccatggcc aaggccagaa agccccggga ggcattgctc tgggccttga 121 gtgaccttga ggagaacgat ttcaagaagt taaagttcta cttacgggat atgaccctgt 181 ctgagggcca gcccccactg gccagagggg agttggaggg cctgattccg gtggacctgg 241 cagaattact gatttcaaag tatggagaaa aggaggctgt gaaagttgtc ctcaagggct 301 tgaaggtcat gaacctgttg gaacttgtgg accagctcag ccatatttgt ctgcatgatt 361 acagagaagt ataccgagag catgtgcgct gcctagagga atggcaggaa gcaggagtca 421 atggcagata caaccaggtg ctcctggtgg ccaagcccag ctcagagagc ccagaatcac 481 ttgcctgccc cttcccggag caggagctgg agtctgtcac ggtggaggct ctatttgatt 541 caggggaaaa gccctcactg gccccatcct tagttgtgct acaggggtcg gctggcactg 601 gaaagacaac tctcgccaga aaaatggtgt tggactgggc caccggtact ctgtacccag 661 gccggtttga ttatgtcttt tatgtaagct gcaaagaagt ggtcctgctg ctggagagca 721 aactggagca gctccttttc tggtgctgcg gggacaatca agcccctgtc acagagattc 781 tgaggcagcc agagcggctc ctgttcatcc tggatggctt tgatgagctg cagaggccct 841 ttgaagaaaa gttgaagaag aggggtttga gtcccaagga gagcctgctg caccttctaa 901 ttaggagaca tacactcccc acgtgctccc ttctcatcac cacccggccc ctggctttga 961 ggaatctgga gcccttgctg aaacaagcac gtcatgtcca tatcctaggc ttctctgagg 1021 aggagagggc gaggtacttc agctcctatt tcacggatga gaagcaagct gaccgtgcct 1081 tcgacattgt acagaaaaat gacattctct acaaagcgtg tcaggttcca ggcatttgct 1141 gggtggtctg ctcctggctg caggggcaga tggagagagg caaagttgtc ttagagacac 1201 ctagaaacag cactgacatc ttcatggctt acgtctccac ctttctgccg cccgatgatg 1261 atgggggctg ctccgagctt tcccggcaca gggtcctgag gagtctgtgc tccctagcag 1321 ctgaagggat tcagcaccag aggttcctat ttgaagaagc tgagctcagg aaacataatt 1381 tagatggccc caggcttgcc gctttcctga gtagtaacga ctaccaattg ggacttgcca 1441 tcaagaagtt ctacagcttc cgccacatca gcttccagga cttttttcat gccatgtctt 1501 acctggtgaa agaggaccaa agccggctgg ggaaggagtc ccgcagagaa gtgcaaaggc 1561 tgctggaggt aaaggagcag gaagggaatg atgagatgac cctcactatg cagtttttac 1621 tggacatctc gaaaaaagac agcttctcga acttggagct caagttctgc ttcagaattt 1681 ctccctgttt agcgcaggat ctgaagcatt ttaaagaaca gatggaatct atgaagcaca 1741 acaggacctg ggatttggaa ttctccctgt atgaagctaa aataaagaat ctGGTAAAAG 1801 GTATTCAGAT GAACAATGTA TCATTCAAGA TAAAACATTC AAATGAAAAG AAATCACAGA 1861 GCCAGAATTT ATTTTCTGTC AAAAGCAGCT TGAGTCATGG ACCTAAGGAG GAGCAAAAAT 1921 GTCCTTCTGT CCATGGACAG AAGGAGGGCA AAGATAATAT AGCAGGAACA CAAAAGGAAG 1981 CTTCTACTGG AAAAGGCAGA GGGACAGAGG AAACACCAAA AAATACTTAC ATATTGCCAA 2041 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 2101 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 2161 TATCTTGTGG AAAGGACGAA TCTTGTTATA CAGTCTTCCT CGTACGCGTT AAGTCgacaa 2221 tcaacctctg gattacaaaa tttgtgaaag att