Construct: ORF TRCN0000477590
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000070.1_s317c1
- Derived from:
- ccsbBroadEn_08415
- DNA Barcode:
- GTATAGCCGTACGGTTCGCTTAGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDHR2 (54825)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477590
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54825 | CDHR2 | cadherin related family mem... | NM_001171976.1 | 99.8% | 99.8% | (many diffs) |
| 2 | human | 54825 | CDHR2 | cadherin related family mem... | NM_017675.5 | 99.8% | 99.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3999
- ORF length:
- 3930
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcccagcta tggctgtcct gcttcctcct tcctgccctc gtggtgtctg 121 tggcagccaa cgtggccccg aagttcctag ccaacatgac gtcagtgatc ctgcctgagg 181 acctgcctgt gggtgcccag gccttctggt tggtagcgga agaccaggac aatgaccctc 241 tgacctatgg gatgagcggc cccaatgcct acttcttcgc tgtcactccg aaaactgggg 301 aagtgaagct ggccagcgct ctggactacg agacactcta cacattcaaa gtcaccatct 361 ccgtgagcga cccctacatc caggtgcaga gggagatgct ggtgattgtg gaagatagaa 421 acgacaacgc acccgttttc cagaacaccg ctttctccac cagcatcaac gagaccctgc 481 ccgtgggcag tgtggtgttc tccgtgctgg ccgtggataa agacatgggg tctgcaggca 541 tggtcgtgta ctccatagag aaggtcatcc ctagcactgg ggacagcgag catctcttcc 601 ggatcctggc caatggctcc atcgtcctca atggcagcct cagctacaac aacaagagcg 661 ctttctacca gctggagctg aaggcctgtg acttgggcgg catgtaccac aacaccttca 721 ccatccagtg ctccctgcct gtcttcctgt ccatctccgt ggtggaccag cctgaccttg 781 acccccagtt tgtcagggag ttttactcgg cctctgtggc tgaggatgca gccaagggaa 841 cctcggtgct gacggtggag gctgtggatg gcgacaaagg catcaatgac cctgtgatct 901 acagcatctc ctactccacg cggcccggct ggtttgacat cggggcagat ggggtgatca 961 gggtcaacgg ctccctggac cgtgagcagc tgctggaggc ggatgaggag gtgcagctgc 1021 aggtcacggc caccgagaca cacctcaaca tctacgggca ggaggccaag gtgagcatct 1081 gggtgacagt gagagtgatg gacgtcaatg accacaaacc tgagttttac aactgcagcc 1141 tcccagcctg caccttcacc cccgaagagg cccaagtgaa cttcactggc tacgtggacg 1201 agcatgcctc cccccgcatc cccatcgatg acctcaccat ggtggtctac gacccggaca 1261 agggcagcaa tggcaccttc ctgttgtcgc tggggggccc cgatgcagaa gccttcagcg 1321 tctccccgga gcgggcagcg ggctcagcct ccgttcaggt gctggtgaga gtatccgcgc 1381 tggtggacta cgagaggcag acggcgatgg cggtgcaggt tgtggccaca gactccgtca 1441 gccagaactt ctccgtcgcc atggtgacca tccaccttag agacattaat gaccacaggc 1501 ccacgtttcc ccagagcttg tacgtcctca cggtgccaga gcacagcgcc accggctctg 1561 tggtcaccga cagcatccac gccacggacc cagacacggg cgcgtggggc caaattacct 1621 acagcctgct cccaggaaat ggggcagacc tcttccaagt ggatcccgtc tcagggacgg 1681 tgacggtgag gaacggtgag ctgctggacc gggagagcca ggccgtgtac tacctgacgc 1741 tgcaggccac agatggcggg aacctgtcct cctccaccac actgcagatc cacctgctgg 1801 acatcaacga caatgcaccc gtggttagcg gctcctacaa catcttcgtc caggaggagg 1861 agggcaatgt ctccgtgacc atccaggccc acgacaatga tgagccgggc accaacaaca 1921 gccgtctgct cttcaacctg ctgcctggcc cctacagcca caacttctcc ttggaccctg 1981 acacagggct cctcagaaac ctggggcccc tggacagaga ggccatcgac cccgccctgg 2041 agggccgcat tgtgctgaca gtgcttgtgt ctgactgcgg cgagcctgtc ctcggcacca 2101 aagtcaatgt caccatcact gtggaggaca tcaatgataa cctgcccatc ttcaatcagt 2161 ccagctacaa ctttacggtg aaggaggagg atccaggagt gctagtgggc gtggtgaagg 2221 cctgggacgc ggaccagacg gaagccaaca accgcatcag cttcagcctg tcggggagtg 2281 gtgccaacta cttcatgatc cgaggcttgg tgctgggggc tgggtgggct gagggctacc 2341 tccggctgcc cccggacgtg agcctggatt acgagacaca gcccgtcttc aacttgacag 2401 tgagtgctga gaacccagac ccccaggggg gtgagaccat agtagacgtc tgcgtgaatg 2461 tgaaagacgt gaacgacaat ccccccaccc tggatgtagc ctcactccgg ggcatccgtg 2521 tggctgagaa tggctcacag cacggccagg tggctgtggt ggttgcctcg gatgtggaca 2581 ccagtgccca gctggagata cagcttgtga acattctctg caccaaggcc ggggtcgatg 2641 tgggcagcct atgctggggc tggttctcag tggcggccaa cggctctgtg tacatcaacc 2701 agagcaaagc catcgactac gaggcctgtg acctggtcac gctggttgtg cgggcctgtg 2761 acctagccac ggaccccggc ttccaggcct acagcaacaa tggaagcctc ctcattacca 2821 ttgaggacgt gaatgacaat gcaccctatt ttctgcctga gaataagact tttgtgatca 2881 tccctgaact cgtgctgccc aaccgggagg tggcttctgt ccgggccaga gacgatgatt 2941 cagggaacaa tggcgtcatc ctgttctcca tcctccgagt agacttcatc tctaaggacg 3001 gggccaccat ccctttccag ggtgtcttct cgatcttcac ctcctccgag gccgacgtgt 3061 tcgctgggag cattcagccg gtgaccagcc tcgactccac tctccaaggc acctaccaag 3121 tgacagtcca ggccagggac agaccttcct tgggtccttt cctggaagcc accaccaccc 3181 tgaatctctt caccgtggac cagagttacc gctcgcggct gcagttctcc acaccgaagg 3241 aggaggtggg cgccaacaga caggcgatta atgcggctct tacccaggca accaggacta 3301 cagtatacat tgtggacatt caggacatag attctgcagc tcgggcccga cctcactcct 3361 acctcgatgc ctactttgtc ttccccaatg ggtcagccct gacccttgat gagctgagtg 3421 tgatgatccg gaatgatcag gactcgctga tgcagctgct gcagctgggg ctggtggtgc 3481 tgggctccca ggagagccag gagtcagacc tgtcgaaaca gctcatcagt gtcatcatag 3541 gattgggagt ggctttgctg ctggtcctTG TGATCATGAC CATGGCCTTC GTGTGTGTGC 3601 GGAAGAGCTA CAACCGGAAG CTTCAAGCTA TGAAGGCTGC CAAGGAGGCC AGGAAGACAG 3661 CAGCAGGGGT GATGCCCTCA GCCCCTGCCA TCCCAGGGAC TAACATGTAC AACACTGAGC 3721 GAGCCAACCC CATGCTGAAC CTCCCCAACA AAGACCTGGG CTTGGAGTAC CTCTCTCCCT 3781 CCAATGACCT GGACTCTGTC AGCGTCAACT CCCTGGACGA CAACTCTGTG GATGTGGACA 3841 AGAACAGTCA GGAAATCAAG GAGCACAGGC CACCACACAC ACCACCAGAG CCAGATCCAG 3901 AGCCCCTGAG CGTGGTCCTG TTAGGACGGC AGGCAGGCGC AAGTGGACAG CTGGAGGGGC 3961 CATCCTACAC CAACGCTGGC CTGGACACCA CGGACCTGTT GCCAACTTTC TTGTACAAAG 4021 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 4081 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 4141 ACGAGTATAG CCGTACGGTT CGCTTAGAAC GCGTTAAGTC gacaatcaac ctctggatta 4201 caaaatttgt gaaagatt